Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_01126 | Not Available | Positive | 1293639 - 1293860 | 8122.38 |
| hypothetical protein | HMPREF1534_01127 | Not Available | Negative | 1293898 - 1295871 | 76439.9 |
| hypothetical protein | HMPREF1534_01128 | Not Available | Negative | 1295937 - 1312160 | 607023.0 |
| hypothetical protein | HMPREF1534_01129 | Not Available | Negative | 1312171 - 1313250 | 39842.0 |
| hypothetical protein | HMPREF1534_01130 | Not Available | Negative | 1313262 - 1313741 | 16838.6 |
| hypothetical protein | HMPREF1534_01131 | Not Available | Positive | 1313836 - 1314135 | 11051.5 |
| hypothetical protein | HMPREF1534_01132 | Not Available | Negative | 1314842 - 1316230 | 53995.9 |
| hypothetical protein | HMPREF1534_01133 | Not Available | Positive | 1316739 - 1316963 | 8565.8 |
| hypothetical protein | HMPREF1534_01134 | Not Available | Negative | 1317341 - 1317796 | 17075.6 |
| hypothetical protein | HMPREF1534_01135 | Not Available | Positive | 1317941 - 1318132 | 7122.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


