Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine aminotransferase | HMPREF1534_01036 | Not Available | Positive | 1213691 - 1214761 | 39535.6 |
| hypothetical protein | HMPREF1534_01037 | Not Available | Positive | 1214824 - 1215744 | 33195.0 |
| hypothetical protein | HMPREF1534_01038 | Not Available | Positive | 1215774 - 1217021 | 47029.0 |
| hypothetical protein | HMPREF1534_01039 | Not Available | Negative | 1217002 - 1217109 | 4078.81 |
| hypothetical protein | HMPREF1534_01040 | Not Available | Positive | 1217250 - 1218161 | 33128.4 |
| hypothetical protein | HMPREF1534_01041 | Not Available | Positive | 1218227 - 1220533 | 86879.6 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_01042 | Not Available | Negative | 1220809 - 1221309 | 19712.9 |
| hypothetical protein | HMPREF1534_01043 | Not Available | Positive | 1221512 - 1221685 | 6588.02 |
| hypothetical protein | HMPREF1534_01044 | Not Available | Positive | 1221678 - 1222166 | 18690.0 |
| hypothetical protein | HMPREF1534_01045 | Not Available | Positive | 1222202 - 1222807 | 22800.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


