Pediococcus acidilactici D3 2195

Gram-positiveCocciNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Pediococcus

Description

Pediococcus acidilactici D3 2195 is a Gram-positive, non-motile cocci bacterium classified as a chemoheterotroph, primarily thriving in anaerobic conditions. This organism is mesophilic, with an optimal growth temperature of 30°C, and is noted for its ability to inhabit multiple environments, including those associated with various hosts. These hosts include Homo sapiens (humans), Gallus gallus (chickens), Hordeum vulgare (barley), Oryctolagus cuniculus (rabbits), Raphanus sativus (radishes), and Salvelinus alpinus (arctic char). Pediococcus acidilactici D3 2195 is characterized by its single replicon structure and is notable for its lack of sporulation. The bacterium is associated with several health effects, including endocarditis, sepsis, skin infections, opportunistic infections, Fournier’s gangrene, and internal organ infections or abscesses. This highlights its potential pathogenicity, particularly in immunocompromised hosts. The ecological role of Pediococcus acidilactici D3 2195 can be contextualized within its interactions with both human and animal hosts, where its presence may contribute to or complicate health outcomes. Its ability to thrive in various biological environments underscores the importance of understanding the dynamics between beneficial and pathogenic roles of such microorganisms within their respective ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusPediococcus
SpeciesPediococcus acidilactici
StrainD3 2195

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Pediococcus acidilactici D3 2195
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens, Gallus gallus, Hordeum vulgare
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Pediococcus acidilactici D3 2195, whole genome shotgun sequence.

Gene Summary

Adenine Count

567482 bp

Thymine Count

568071 bp

Guanine Count

411395 bp

Cytosine Count

414278 bp

Genome Length

1961226 bp

Protein-coding Genes

1925 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPAD3_0599Not AvailablePositive594049 - 5942467416.68
Abi family proteinPAD3_0600Not AvailablePositive594635 - 59566340247.9
Phage integrasePAD3_0601Not AvailablePositive595798 - 59691343356.8
AttrNot AvailableNot AvailablePositive601018 - 601036Not Available
phosphonate metabolism transcriptional regulator phnf, phnfPAD3_0001Not AvailableNegative19 - 72026229.4
n-acetylglucosamine-6-phosphate deacetylase, nagaPAD3_0002Not AvailableNegative748 - 189041481.9
pyrroline-5-carboxylate reductase, procPAD3_0003Not AvailableNegative1958 - 274627150.1
zinc-binding alcohol dehydrogenase family proteinPAD3_0004Not AvailableNegative3154 - 346510962.4
zinc-binding alcohol dehydrogenase family proteinPAD3_0005Not AvailableNegative3534 - 416922876.2
Trna-glnNot AvailableNot AvailablePositive4398 - 4472Not Available

Displaying genes 61 – 70 of 2030 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Fournier ??s gangreneCausesPMC12859440
Opportunistic infectionsCausesPMC12859440
SepsisCausesPMC12859440
Internal organ infection/abscessesCausesPMC12859440
EndocarditisCausesPMC12859440
Skin infectionsCausesPMC12859440

Displaying health effects 1 – 6 of 6 in total