Agrobacterium tumefaciens str. Cherry 2E-2-2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. Cherry 2E-2-2 is a Gram-negative, rod-shaped bacterium characterized by its aerobic nature and mobility, facilitated by the presence of flagella. This species thrives in multiple habitats, highlighting its adaptability to different environmental conditions. It is classified as mesophilic, with an optimal growth temperature of 25°C, allowing it to flourish in moderate temperature ranges. This strain possesses a single replicon and features a double membrane structure, which is typical of Gram-negative bacteria. A. tumefaciens is known to be free-living, indicating that it does not depend on a host organism for survival. This trait contributes to its ecological versatility, as it can occupy various niches in the environment. The accession number for this strain is APCC00000000.1, which provides a reference for further genomic and phenotypic studies. The ability of A. tumefaciens to thrive in diverse habitats and its free-living nature suggest that it plays an important role in its ecosystem, potentially participating in nutrient cycling and interactions with other microorganisms. Its mobility and adaptability may also facilitate colonization of different substrates, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCherry 2E-2-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. Cherry 2E-2-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. Cherry 2E-2-2 contig112, whole

Gene Summary

Adenine Count

1086899 bp

Thymine Count

1089154 bp

Guanine Count

1625328 bp

Cytosine Count

1623912 bp

Genome Length

5425293 bp

Protein-coding Genes

5033 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
twin-arginine translocation pathway signal sequence domain-containing proteinH009_07746Not AvailablePositive1666248 - 166816169417.0
periplasmic nitrate reductase, cytochrome c-type proteinH009_07751Not AvailableNegative1668270 - 166896826048.3
periplasmic nitrate reductase small subunitH009_07756Not AvailableNegative1668968 - 166941116210.5
nitrate reductase catalytic subunitH009_07761Not AvailableNegative1669429 - 167193393440.2
periplasmic nitrate reductase, napd proteinH009_07766Not AvailableNegative1671908 - 167219510038.8
periplasmic nitrate reductase, ferredoxin-like proteinH009_07771Not AvailableNegative1672188 - 167253211999.3
periplasmic nitrate reductase napeH009_07776Not AvailableNegative1672696 - 16728214439.6
hypothetical proteinH009_07781Not AvailableNegative1673083 - 167427042411.5
anion abc transporter atpaseH009_07786Not AvailableNegative1674267 - 167501927396.2
anion abc transporter permeaseH009_07791Not AvailableNegative1675016 - 167582528653.4

Displaying genes 1571 – 1580 of 5092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.