Agrobacterium tumefaciens str. Cherry 2E-2-2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. Cherry 2E-2-2 is a Gram-negative, rod-shaped bacterium characterized by its aerobic nature and mobility, facilitated by the presence of flagella. This species thrives in multiple habitats, highlighting its adaptability to different environmental conditions. It is classified as mesophilic, with an optimal growth temperature of 25°C, allowing it to flourish in moderate temperature ranges. This strain possesses a single replicon and features a double membrane structure, which is typical of Gram-negative bacteria. A. tumefaciens is known to be free-living, indicating that it does not depend on a host organism for survival. This trait contributes to its ecological versatility, as it can occupy various niches in the environment. The accession number for this strain is APCC00000000.1, which provides a reference for further genomic and phenotypic studies. The ability of A. tumefaciens to thrive in diverse habitats and its free-living nature suggest that it plays an important role in its ecosystem, potentially participating in nutrient cycling and interactions with other microorganisms. Its mobility and adaptability may also facilitate colonization of different substrates, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCherry 2E-2-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. Cherry 2E-2-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. Cherry 2E-2-2 contig112, whole

Gene Summary

Adenine Count

1086899 bp

Thymine Count

1089154 bp

Guanine Count

1625328 bp

Cytosine Count

1623912 bp

Genome Length

5425293 bp

Protein-coding Genes

5033 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit secaH009_07594Not AvailableNegative1625534 - 1628251101641.0
ppic-type peptidyl-prolyl cis-trans isomeraseH009_07599Not AvailablePositive1628431 - 162935734316.0
mfs family transporterH009_07606Not AvailableNegative1629432 - 163067944278.9
lysr family transcriptional regulatorH009_07611Not AvailablePositive1630772 - 163169532940.1
adenine deaminaseH009_07616Not AvailableNegative1631723 - 163351662734.1
inosine-uridine preferring nucleoside hydrolaseH009_07621Not AvailableNegative1633513 - 163443331796.4
spermidine/putrescine abc transporter nucleotide-binding protein/atpaseH009_07626Not AvailableNegative1634436 - 163546136207.0
abc transporter permeaseH009_07631Not AvailableNegative1635454 - 163623327872.1
spermidine/putrescine abc transporter permeaseH009_07636Not AvailableNegative1636230 - 163705729450.0
spermidine/putrescine abc transporter substrate binding proteinH009_07641Not AvailableNegative1637224 - 163824637276.7

Displaying genes 1541 – 1550 of 5092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.