Agrobacterium tumefaciens str. Cherry 2E-2-2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens str. Cherry 2E-2-2 is a Gram-negative, rod-shaped bacterium characterized by its aerobic nature and mobility, facilitated by the presence of flagella. This species thrives in multiple habitats, highlighting its adaptability to different environmental conditions. It is classified as mesophilic, with an optimal growth temperature of 25°C, allowing it to flourish in moderate temperature ranges. This strain possesses a single replicon and features a double membrane structure, which is typical of Gram-negative bacteria. A. tumefaciens is known to be free-living, indicating that it does not depend on a host organism for survival. This trait contributes to its ecological versatility, as it can occupy various niches in the environment. The accession number for this strain is APCC00000000.1, which provides a reference for further genomic and phenotypic studies. The ability of A. tumefaciens to thrive in diverse habitats and its free-living nature suggest that it plays an important role in its ecosystem, potentially participating in nutrient cycling and interactions with other microorganisms. Its mobility and adaptability may also facilitate colonization of different substrates, further enhancing its ecological impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainCherry 2E-2-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens str. Cherry 2E-2-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens str. Cherry 2E-2-2 contig112, whole

Gene Summary

Adenine Count

1086899 bp

Thymine Count

1089154 bp

Guanine Count

1625328 bp

Cytosine Count

1623912 bp

Genome Length

5425293 bp

Protein-coding Genes

5033 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinH009_25026Not AvailableNegative5333154 - 533348012697.5
hypothetical proteinH009_25031Not AvailableNegative5333672 - 533470338169.3
beta-mannosidase precursorH009_25036Not AvailableNegative5334807 - 533733895032.1
laci family transcriptional regulatorH009_25041Not AvailablePositive5337796 - 533884838579.3
abc transporter, substrate binding protein (zinc)H009_25046Not AvailableNegative5339043 - 534003535256.6
abc transporter, nucleotide binding/atpase protein (zinc)H009_25051Not AvailablePositive5340140 - 534105432889.1
high-affinity zinc uptake system membrane protein znubH009_25056Not AvailablePositive5341047 - 534186528505.0
transcriptional regulator, fur family proteinH009_25061Not AvailablePositive5341862 - 534227515500.5
hypothetical proteinH009_25066Not AvailableNegative5342312 - 534284518821.5
hypothetical proteinH009_25071Not AvailableNegative5342879 - 534356824530.5

Displaying genes 5001 – 5010 of 5092 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.