Halorubrum aidingense JCM 13560

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum aidingense JCM 13560 is a rod-shaped archaeon notable for its single replicon structure, which is characteristic of many prokaryotes. The presence of flagella indicates that this organism possesses the capability for motility, which is essential for navigating its environment and possibly for nutrient acquisition or evasion from predators. The organism is cataloged under the accession number AOJI00000000.1, which provides a reference for its genomic data. This genetic information can be crucial for understanding its metabolic pathways and ecological roles within its habitat. In terms of ecological insight, the motility provided by flagella may allow Halorubrum aidingense to thrive in extreme environments, typical for halophilic archaea, such as high-salinity waters. This ability to move toward favorable conditions or resources could enhance its survival and competitiveness in such extreme niches. Overall, Halorubrum aidingense exemplifies the adaptations of extremophilic microorganisms, showcasing how structural features like shape and motility mechanisms play a significant role in their ecological strategies.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum aidingense
StrainJCM 13560

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum aidingense JCM 13560 contig_37, whole genome shotgun

Gene Summary

Adenine Count

512499 bp

Thymine Count

507369 bp

Guanine Count

1046497 bp

Cytosine Count

1042096 bp

Genome Length

3108525 bp

Protein-coding Genes

2965 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit b'C461_13616Not AvailableNegative2789838 - 279166767622.5
dna-directed rna polymerase subunit b''C461_13621Not AvailableNegative2791669 - 279323459183.7
dna-directed rna polymerase subunit hC461_13626Not AvailableNegative2793231 - 27934618552.13
Trna-aspNot AvailableNot AvailablePositive2793736 - 2793808Not Available
Trna-aspNot AvailableNot AvailablePositive2793839 - 2793911Not Available
histone deacetylase superfamily proteinC461_13631Not AvailableNegative2794133 - 279513735929.0
transcription factor cbf/nf-y/histone domain proteinC461_13636Not AvailableNegative2795138 - 279556915716.5
replication factor aC461_13641Not AvailableNegative2795718 - 279718451651.3
Trna-pseudoNot AvailableNot AvailablePositive2797556 - 2797628Not Available
hypothetical proteinC461_13646Not AvailablePositive2797826 - 279847322847.5

Displaying genes 2731 – 2740 of 3031 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.