Halorubrum aidingense JCM 13560

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum aidingense JCM 13560 is a rod-shaped archaeon notable for its single replicon structure, which is characteristic of many prokaryotes. The presence of flagella indicates that this organism possesses the capability for motility, which is essential for navigating its environment and possibly for nutrient acquisition or evasion from predators. The organism is cataloged under the accession number AOJI00000000.1, which provides a reference for its genomic data. This genetic information can be crucial for understanding its metabolic pathways and ecological roles within its habitat. In terms of ecological insight, the motility provided by flagella may allow Halorubrum aidingense to thrive in extreme environments, typical for halophilic archaea, such as high-salinity waters. This ability to move toward favorable conditions or resources could enhance its survival and competitiveness in such extreme niches. Overall, Halorubrum aidingense exemplifies the adaptations of extremophilic microorganisms, showcasing how structural features like shape and motility mechanisms play a significant role in their ecological strategies.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum aidingense
StrainJCM 13560

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum aidingense JCM 13560 contig_37, whole genome shotgun

Gene Summary

Adenine Count

512499 bp

Thymine Count

507369 bp

Guanine Count

1046497 bp

Cytosine Count

1042096 bp

Genome Length

3108525 bp

Protein-coding Genes

2965 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC461_11774Not AvailableNegative2388163 - 238849511429.3
3-methyl-2-oxobutanoate hydroxymethyltransferaseC461_11779Not AvailablePositive2388562 - 238936828023.8
histone family protein dna-binding proteinC461_11784Not AvailablePositive2389759 - 239022015986.7
hypothetical proteinC461_11789Not AvailablePositive2390391 - 239240975034.4
hypothetical proteinC461_11794Not AvailablePositive2392507 - 239367941307.9
mur ligase family capb proteinC461_11799Not AvailablePositive2393679 - 239488745703.8
tyrosyl-trna ligaseC461_11804Not AvailablePositive2394969 - 239595536356.2
dna topoisomerase iC461_11809Not AvailableNegative2395991 - 239674626794.5
rimk domain protein atp-graspC461_11814Not AvailablePositive2396877 - 239822648420.0
dead/deah box helicaseC461_11819Not AvailableNegative2398228 - 240057085555.3

Displaying genes 2361 – 2370 of 3031 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.