Natrinema limicola JCM 13563

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natrinema

Description

Natrinema limicola JCM 13563 is a halophilic archaeon known for its adaptation to high-salinity environments. This organism has a single replicon, indicating a streamlined genomic structure that allows for efficient replication and maintenance under extreme conditions. The strain is cataloged under the accession number AOIT00000000.1, which provides a reference for its genomic data. As a member of the Archaea domain, Natrinema limicola exhibits unique biochemical properties that distinguish it from bacteria and eukaryotes. Its halophilic nature suggests that it thrives in saline habitats, potentially contributing to the microbial diversity and ecological balance of such environments. The ecological role of Natrinema limicola may involve nutrient cycling and the degradation of organic materials in hypersaline ecosystems. By participating in these processes, this archaeon can help maintain the health and stability of its habitat, demonstrating the importance of halophiles in extreme environments. This strain's adaptation mechanisms may also provide insights into microbial life in similar extreme conditions, highlighting the resilience and versatility of life on Earth.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema limicola
StrainJCM 13563

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natrinema limicola JCM 13563 contig_94, whole genome shotgun

Gene Summary

Adenine Count

670322 bp

Thymine Count

675173 bp

Guanine Count

1086253 bp

Cytosine Count

1090120 bp

Genome Length

3522035 bp

Protein-coding Genes

3506 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase small subunitC476_14908Not AvailablePositive2920331 - 292097223385.9
hypothetical proteinC476_14913Not AvailableNegative2920981 - 292181730366.5
3-isopropylmalate dehydrogenaseC476_14918Not AvailablePositive2922367 - 292335034512.1
diphthine synthaseC476_14923Not AvailableNegative2923467 - 292424028006.8
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthaseC476_14928Not AvailableNegative2925016 - 292683964863.6
isochorismate synthaseC476_14933Not AvailableNegative2926846 - 292818948937.6
oxidoreductase molybdopterin binding proteinC476_14938Not AvailableNegative2928251 - 292884722797.9
hypothetical proteinC476_14943Not AvailablePositive2929034 - 292933311152.4
copg family transcriptional regulatorC476_14948Not AvailablePositive2929490 - 29297178306.71
hypothetical proteinC476_14953Not AvailableNegative2929894 - 29300766167.24

Displaying genes 2981 – 2990 of 3571 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.