Natrinema limicola JCM 13563

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Natrialbaceae

Genus

Natrinema

Description

Natrinema limicola JCM 13563 is a halophilic archaeon known for its adaptation to high-salinity environments. This organism has a single replicon, indicating a streamlined genomic structure that allows for efficient replication and maintenance under extreme conditions. The strain is cataloged under the accession number AOIT00000000.1, which provides a reference for its genomic data. As a member of the Archaea domain, Natrinema limicola exhibits unique biochemical properties that distinguish it from bacteria and eukaryotes. Its halophilic nature suggests that it thrives in saline habitats, potentially contributing to the microbial diversity and ecological balance of such environments. The ecological role of Natrinema limicola may involve nutrient cycling and the degradation of organic materials in hypersaline ecosystems. By participating in these processes, this archaeon can help maintain the health and stability of its habitat, demonstrating the importance of halophiles in extreme environments. This strain's adaptation mechanisms may also provide insights into microbial life in similar extreme conditions, highlighting the resilience and versatility of life on Earth.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyNatrialbaceae
GenusNatrinema
SpeciesNatrinema limicola
StrainJCM 13563

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Natrinema limicola JCM 13563 contig_94, whole genome shotgun

Gene Summary

Adenine Count

670322 bp

Thymine Count

675173 bp

Guanine Count

1086253 bp

Cytosine Count

1090120 bp

Genome Length

3522035 bp

Protein-coding Genes

3506 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase s1 and s6 chymotrypsin/hapC476_10696Not AvailableNegative2099469 - 210050935233.1
muconate lactonizing mandelate racemase proteinC476_10701Not AvailableNegative2100654 - 210189245807.6
hypothetical proteinC476_10706Not AvailablePositive2102068 - 210288029038.9
dna binding domain-containing proteinC476_10711Not AvailableNegative2103140 - 210366718451.8
heat shock protein dnaj domain proteinC476_10716Not AvailableNegative2103848 - 210515845285.0
dna polymerase ivC476_10721Not AvailableNegative2105290 - 210655546122.1
gcn5-related n-acetyltransferaseC476_10726Not AvailableNegative2106635 - 210736627756.4
transcription termination factor tfsC476_10731Not AvailableNegative2107481 - 210781012293.9
beta-ribofuranosylaminobenzene 5'-phosphate synthaseC476_10736Not AvailableNegative2107904 - 210889634333.5
dihydroxy-acid dehydrataseC476_10741Not AvailablePositive2109119 - 211084660909.1

Displaying genes 2151 – 2160 of 3571 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.