Kocuria palustris PEL

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris PEL is a Gram-positive bacterium characterized by its aerobic respiration and the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genetic organization, which may contribute to its adaptability in various environments. The accession number for genomic information is ANHZ00000000.2, providing a reference for further genomic studies. As an aerobe, Kocuria palustris PEL thrives in environments rich in oxygen, which can influence its ecological role. The motility conferred by flagella may allow this bacterium to navigate toward favorable conditions or nutrient sources, enhancing its survival and proliferation. Understanding the characteristics of Kocuria palustris PEL can provide insights into its ecological interactions, particularly in oxygen-rich habitats where it may play a role in nutrient cycling or as part of a microbial community. Its Gram-positive nature may also suggest a potential for resilience in varied environmental conditions, adding to its ecological significance.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainPEL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris PEL contig_55, whole genome shotgun sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2561 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-alaNot AvailableNot AvailablePositive1489750 - 1489825Not Available
helicaseC884_00233Not AvailablePositive1490172 - 1493057108634.0
type iii restriction-modification system methylation subunitC884_00234Not AvailablePositive1493114 - 149506673549.0
type iii restriction-modification system restriction subunitC884_00235Not AvailablePositive1495069 - 1498071113212.0
atp-dependent endonuclease of the old family-like proteinC884_00236Not AvailablePositive1498136 - 149998969155.5
atp-dependent dna helicase uvrd/pcraC884_00237Not AvailablePositive1499995 - 150172262825.7
major facilitator family transporterC884_00238Not AvailableNegative1504249 - 150473416341.7
1,4-alpha-glucan (glycogen) branching enzyme, gh-13-typeC884_00239Not AvailableNegative1505193 - 1509116142900.0
trehalose synthaseC884_00240Not AvailableNegative1509164 - 151093967482.0
alpha-amylaseC884_00241Not AvailableNegative1511036 - 151322281270.0

Displaying genes 1381 – 1390 of 2607 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

376 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 376 metabolites

Health Effects

No health effects information available for this bacterium.