Kocuria palustris PEL

Gram-positiveAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria palustris PEL is a Gram-positive bacterium characterized by its aerobic respiration and the presence of flagella, which suggests motility. This species has a single replicon, indicating a streamlined genetic organization, which may contribute to its adaptability in various environments. The accession number for genomic information is ANHZ00000000.2, providing a reference for further genomic studies. As an aerobe, Kocuria palustris PEL thrives in environments rich in oxygen, which can influence its ecological role. The motility conferred by flagella may allow this bacterium to navigate toward favorable conditions or nutrient sources, enhancing its survival and proliferation. Understanding the characteristics of Kocuria palustris PEL can provide insights into its ecological interactions, particularly in oxygen-rich habitats where it may play a role in nutrient cycling or as part of a microbial community. Its Gram-positive nature may also suggest a potential for resilience in varied environmental conditions, adding to its ecological significance.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria palustris
StrainPEL

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria palustris PEL contig_55, whole genome shotgun sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2561 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prolyl-trna synthetaseC884_02407Not AvailablePositive1292916 - 129471565527.1
hypothetical proteinC884_02408Not AvailableNegative1294788 - 129575333784.4
hypothetical proteinC884_02409Not AvailablePositive1295988 - 129650919297.7
transcription termination protein nusaC884_02410Not AvailablePositive1296728 - 129771435696.6
putative nucleic-acid-binding protein implicated in transcription terminationC884_02411Not AvailablePositive1297871 - 129828114849.8
translation initiation factor 2C884_02412Not AvailablePositive1298496 - 1301411101287.0
ribosome-binding factor aC884_02413Not AvailablePositive1301587 - 130207217303.9
trna pseudouridine synthase bC884_02414Not AvailablePositive1302062 - 130305134217.7
hypothetical proteinC884_02415Not AvailablePositive1303104 - 130347513598.8
putative phage prohead proteaseC884_02416Not AvailableNegative1304518 - 130638066378.7

Displaying genes 1201 – 1210 of 2607 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

376 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 376 metabolites

Health Effects

No health effects information available for this bacterium.