Lactococcus garvieae DCC43

Coccifacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Streptococcaceae

Genus

Lactococcus

Description

Lactococcus garvieae DCC43 is a Gram-positive bacterium characterized by its cocci shape and facultative anaerobic metabolism. This species is notable for its ability to thrive in both the presence and absence of oxygen, allowing it to adapt to various environmental conditions. Lactococcus garvieae DCC43 possesses a single replicon, indicating its genetic material is organized in a straightforward manner, which is typical for many bacteria in the Lactococcus genus. The presence of flagella suggests that this strain has the capability for motility, which may play a role in its ecological interactions and colonization abilities. The accession number for Lactococcus garvieae DCC43 is AMQS00000000.1, providing a reference point for further genomic and taxonomic studies. In a broader biological context, the characteristics of Lactococcus garvieae DCC43 could suggest its potential role in various ecosystems, particularly in environments where it can exert its facultative anaerobic capabilities. Its motility may enhance its survival and competitiveness in dynamic habitats, indicating an adaptive advantage in fluctuating oxygen levels. Understanding such traits can provide insights into the ecological niches occupied by Lactococcus species and their interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusLactococcus
SpeciesLactococcus garvieae
StrainDCC43

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Lactococcus garvieae DCC43
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lactococcus garvieae DCC43 contig_75, whole genome shotgun

Gene Summary

Adenine Count

686287 bp

Thymine Count

708659 bp

Guanine Count

408724 bp

Cytosine Count

440717 bp

Genome Length

2244387 bp

Protein-coding Genes

2120 genes

Non-Coding Genes

165 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription elongation factor greaC426_0799A2RIW3Negative788589 - 78906217528.9
yceg-like proteinC426_0800A0A0H2ZLQ1Negative789086 - 79078963708.5
dna-directed rna polymerase delta subunitC426_0801Q9CHT4Negative790895 - 79145221210.6
adenine phosphoribosyltransferaseC426_0802A2RIW0Negative791607 - 79211918769.8
single-stranded-dna-specific exonuclease recjC426_0803O32044Negative792109 - 79434384035.6
oxidoreductaseC426_0804P54554Negative794377 - 79502424120.8
ribonuclease zC426_0805Q9CHT8Negative795005 - 79593734421.1
Trna-argNot AvailableNot AvailablePositive796116 - 796187Not Available
2-haloalkanoic acid dehalogenaseC426_0807Not AvailableNegative796239 - 79692827419.8
nucleoside-diphosphate-sugar epimeraseC426_0808Not AvailableNegative797016 - 79793335222.5

Displaying genes 931 – 940 of 2285 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

288 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 288 metabolites

Health Effects

No health effects information available for this bacterium.