Brevundimonas diminuta 470-4

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Brevundimonas

Description

Brevundimonas diminuta 470-4 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is significant in the context of its genetic stability and replication processes. The strain is cataloged under the accession number AMFA00000000.1, indicating its inclusion in genetic databases for further research and reference. As an anaerobe, B. diminuta 470-4 thrives in environments devoid of oxygen, which influences its metabolic pathways and ecological niches. This trait allows it to inhabit a variety of anoxic environments, potentially including sediments and other substrates where oxygen levels are limited or absent. Brevundimonas species, including B. diminuta, are often studied for their roles in biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Their ability to survive and grow in anaerobic conditions suggests they may play a vital role in the microbiome of diverse ecosystems, contributing to the breakdown of organic materials and facilitating nutrient availability for other organisms. In summary, the traits of Brevundimonas diminuta 470-4 highlight its adaptation to anaerobic environments and its potential ecological significance in organic matter processing and nutrient cycling within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusBrevundimonas
SpeciesBrevundimonas diminuta
Strain470-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brevundimonas diminuta 470-4 B_diminuta-1.0_Cont728.1, whole

Gene Summary

Adenine Count

552237 bp

Thymine Count

550227 bp

Guanine Count

1119287 bp

Cytosine Count

1114171 bp

Genome Length

3335922 bp

Protein-coding Genes

3496 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-opening dioxygenase, catalytic subunit ligbHMPREF0185_03309Not AvailablePositive3108206 - 310892225943.5
doxx family proteinHMPREF0185_03310Not AvailableNegative3108944 - 310935414467.8
amp-binding enzymeHMPREF0185_03311Not AvailableNegative3109575 - 311099650883.5
lipoyl synthaseHMPREF0185_03312Not AvailablePositive3111209 - 311218335892.2
polyketide cyclase/dehydraseHMPREF0185_03313Not AvailablePositive3112188 - 311264017377.1
fad dependent oxidoreductaseHMPREF0185_03314Not AvailablePositive3112645 - 311376639459.9
ribosomal protein l32HMPREF0185_03315Not AvailablePositive3113837 - 31140979866.87
hypothetical proteinHMPREF0185_03316Not AvailablePositive3114177 - 311481521913.2
phosphopyruvate hydrataseHMPREF0185_03317Not AvailablePositive3114898 - 311617545064.2
septum formation initiatorHMPREF0185_03318Not AvailablePositive3116329 - 311664911906.5

Displaying genes 3311 – 3320 of 3557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

447 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 447 metabolites

Health Effects

No health effects information available for this bacterium.