Brevundimonas diminuta 470-4

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Caulobacterales

Family

Caulobacteraceae

Genus

Brevundimonas

Description

Brevundimonas diminuta 470-4 is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. This species is notable for possessing a single replicon, which is significant in the context of its genetic stability and replication processes. The strain is cataloged under the accession number AMFA00000000.1, indicating its inclusion in genetic databases for further research and reference. As an anaerobe, B. diminuta 470-4 thrives in environments devoid of oxygen, which influences its metabolic pathways and ecological niches. This trait allows it to inhabit a variety of anoxic environments, potentially including sediments and other substrates where oxygen levels are limited or absent. Brevundimonas species, including B. diminuta, are often studied for their roles in biogeochemical cycles, particularly in nutrient cycling and organic matter decomposition. Their ability to survive and grow in anaerobic conditions suggests they may play a vital role in the microbiome of diverse ecosystems, contributing to the breakdown of organic materials and facilitating nutrient availability for other organisms. In summary, the traits of Brevundimonas diminuta 470-4 highlight its adaptation to anaerobic environments and its potential ecological significance in organic matter processing and nutrient cycling within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderCaulobacterales
FamilyCaulobacteraceae
GenusBrevundimonas
SpeciesBrevundimonas diminuta
Strain470-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brevundimonas diminuta 470-4 B_diminuta-1.0_Cont728.1, whole

Gene Summary

Adenine Count

552237 bp

Thymine Count

550227 bp

Guanine Count

1119287 bp

Cytosine Count

1114171 bp

Genome Length

3335922 bp

Protein-coding Genes

3496 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative serpin b6HMPREF0185_01977Not AvailableNegative1845734 - 184700545147.7
hypothetical proteinHMPREF0185_01978Not AvailableNegative1847005 - 184739113334.9
ompa family proteinHMPREF0185_01979Not AvailableNegative1847453 - 184807021643.5
tm helix containing proteinHMPREF0185_01980Not AvailableNegative1848137 - 184943844153.8
peptidoglycan binding domain proteinHMPREF0185_01981Not AvailablePositive1849853 - 185028115083.6
hypothetical proteinHMPREF0185_01982Not AvailableNegative1850276 - 18504465951.33
hypothetical proteinHMPREF0185_01983Not AvailablePositive1850653 - 185110216474.4
hypothetical proteinHMPREF0185_01984Not AvailableNegative1851498 - 185178810536.5
caax amino terminal protease family proteinHMPREF0185_01985Not AvailableNegative1851989 - 185273826513.9
arac-like ligand binding domain proteinHMPREF0185_01986Not AvailableNegative1852983 - 185378929496.7

Displaying genes 2001 – 2010 of 3557 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

447 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 447 metabolites

Health Effects

No health effects information available for this bacterium.