Novosphingobium sp. AP12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AP12 is a bacterial species characterized by its possession of flagella, which indicates mobility and the ability to navigate through various environments. The presence of flagella can enhance the organism's capacity to colonize surfaces or interact with other microorganisms and substrates in its habitat. Genetically, Novosphingobium sp. AP12 has a single replicon, suggesting a streamlined genomic organization typical of many bacteria, which can influence its replication and stability under different environmental conditions. The genomic data for this species is accessible under the accession number AKKE00000000.1, which allows for further analysis and comparison with other related bacterial strains. Ecologically, the genus Novosphingobium is known for its role in the degradation of complex organic compounds, particularly in contaminated environments. The presence of flagella may enhance the ecological versatility of Novosphingobium sp. AP12, allowing it to effectively colonize and thrive in diverse niches, particularly in environments where organic pollutants are present. This adaptability could be significant for bioremediation efforts, as the organism might contribute to the breakdown of harmful substances, thereby playing a role in ecosystem health and restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AP12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AP12 PMI02_contig_549.549, whole genome

Gene Summary

Adenine Count

955216 bp

Thymine Count

957743 bp

Guanine Count

1850173 bp

Cytosine Count

1848485 bp

Genome Length

5611617 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integration host factor, beta subunitPMI02_03541Not AvailablePositive3712594 - 371287510655.7
hypothetical proteinPMI02_03542Not AvailablePositive3712890 - 37131478042.22
Trna-leuNot AvailableNot AvailablePositive3713223 - 3713306Not Available
pilz domain-containing proteinPMI02_03544Not AvailablePositive3713488 - 371413523964.9
methionine-r-sulfoxide reductasePMI02_03545Not AvailableNegative3714146 - 371463417587.9
hypothetical proteinPMI02_03546Not AvailableNegative3714737 - 371598743734.9
abc-type uncharacterized transport system, atpase componentPMI02_03547Not AvailableNegative3715984 - 371695834905.2
putative fe-s proteinPMI02_03548Not AvailablePositive3716984 - 371812340849.5
nad(p)h-nitrite reductasePMI02_03549Not AvailableNegative3718127 - 371935343542.2
luciferase family oxidoreductase, group 1PMI02_03550Not AvailableNegative3719510 - 372050834912.7

Displaying genes 3431 – 3440 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.