Novosphingobium sp. AP12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AP12 is a bacterial species characterized by its possession of flagella, which indicates mobility and the ability to navigate through various environments. The presence of flagella can enhance the organism's capacity to colonize surfaces or interact with other microorganisms and substrates in its habitat. Genetically, Novosphingobium sp. AP12 has a single replicon, suggesting a streamlined genomic organization typical of many bacteria, which can influence its replication and stability under different environmental conditions. The genomic data for this species is accessible under the accession number AKKE00000000.1, which allows for further analysis and comparison with other related bacterial strains. Ecologically, the genus Novosphingobium is known for its role in the degradation of complex organic compounds, particularly in contaminated environments. The presence of flagella may enhance the ecological versatility of Novosphingobium sp. AP12, allowing it to effectively colonize and thrive in diverse niches, particularly in environments where organic pollutants are present. This adaptability could be significant for bioremediation efforts, as the organism might contribute to the breakdown of harmful substances, thereby playing a role in ecosystem health and restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AP12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AP12 PMI02_contig_549.549, whole genome

Gene Summary

Adenine Count

955216 bp

Thymine Count

957743 bp

Guanine Count

1850173 bp

Cytosine Count

1848485 bp

Genome Length

5611617 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentPMI02_02418Not AvailableNegative2679220 - 268023636929.2
abc-type dipeptide transport system, periplasmic componentPMI02_02419Not AvailableNegative2680272 - 268183756626.9
flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductasePMI02_02420Not AvailablePositive2682313 - 268352444425.0
abc-type dipeptide transport system, periplasmic componentPMI02_02421Not AvailablePositive2683524 - 268505655898.4
abc-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentPMI02_02422Not AvailablePositive2685188 - 268624938424.9
ribulose-5-phosphate 4-epimerase-like epimerase or aldolasePMI02_02423Not AvailablePositive2686270 - 268700727198.2
flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductasePMI02_02424Not AvailablePositive2687024 - 268823544239.5
abc-type dipeptide/oligopeptide/nickel transport system, permease componentPMI02_02425Not AvailablePositive2688275 - 268939639395.0
abc-type dipeptide/oligopeptide/nickel transport system, permease componentPMI02_02426Not AvailablePositive2689393 - 269028931763.8
oligopeptide/dipeptide abc transporter, atp-binding proteinPMI02_02427Not AvailablePositive2690286 - 269207064016.3

Displaying genes 2441 – 2450 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.