Novosphingobium sp. AP12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AP12 is a bacterial species characterized by its possession of flagella, which indicates mobility and the ability to navigate through various environments. The presence of flagella can enhance the organism's capacity to colonize surfaces or interact with other microorganisms and substrates in its habitat. Genetically, Novosphingobium sp. AP12 has a single replicon, suggesting a streamlined genomic organization typical of many bacteria, which can influence its replication and stability under different environmental conditions. The genomic data for this species is accessible under the accession number AKKE00000000.1, which allows for further analysis and comparison with other related bacterial strains. Ecologically, the genus Novosphingobium is known for its role in the degradation of complex organic compounds, particularly in contaminated environments. The presence of flagella may enhance the ecological versatility of Novosphingobium sp. AP12, allowing it to effectively colonize and thrive in diverse niches, particularly in environments where organic pollutants are present. This adaptability could be significant for bioremediation efforts, as the organism might contribute to the breakdown of harmful substances, thereby playing a role in ecosystem health and restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AP12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AP12 PMI02_contig_549.549, whole genome

Gene Summary

Adenine Count

955216 bp

Thymine Count

957743 bp

Guanine Count

1850173 bp

Cytosine Count

1848485 bp

Genome Length

5611617 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
arginine and ornithine succinyltransferase subunitPMI02_01815Not AvailablePositive2036727 - 203773436593.4
succinylarginine dihydrolasePMI02_01816Not AvailablePositive2037781 - 203904345085.6
haloacid dehalogenase superfamily protein, subfamily ia, variant 3 with third motif having dd or edPMI02_01817Not AvailablePositive2039119 - 203982925133.2
ketosteroid isomerase-like enzymePMI02_01818Not AvailablePositive2039881 - 204034216516.4
4-hydroxyphenylpyruvate dioxygenasePMI02_01819Not AvailableNegative2040382 - 204149441390.1
phenylalanine-4-hydroxylase, monomeric formPMI02_01820Not AvailableNegative2041491 - 204242635223.9
transcriptional regulatorPMI02_01821Not AvailablePositive2042455 - 204291617173.0
nad-specific glutamate dehydrogenasePMI02_01822Not AvailableNegative2042955 - 2047721170959.0
2-nitropropane dioxygenase-like enzymePMI02_01823Not AvailablePositive2048097 - 204908633978.0
putative tim-barrel fold metal-dependent hydrolasePMI02_01824Not AvailableNegative2049117 - 205011235582.1

Displaying genes 1841 – 1850 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.