Novosphingobium sp. AP12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AP12 is a bacterial species characterized by its possession of flagella, which indicates mobility and the ability to navigate through various environments. The presence of flagella can enhance the organism's capacity to colonize surfaces or interact with other microorganisms and substrates in its habitat. Genetically, Novosphingobium sp. AP12 has a single replicon, suggesting a streamlined genomic organization typical of many bacteria, which can influence its replication and stability under different environmental conditions. The genomic data for this species is accessible under the accession number AKKE00000000.1, which allows for further analysis and comparison with other related bacterial strains. Ecologically, the genus Novosphingobium is known for its role in the degradation of complex organic compounds, particularly in contaminated environments. The presence of flagella may enhance the ecological versatility of Novosphingobium sp. AP12, allowing it to effectively colonize and thrive in diverse niches, particularly in environments where organic pollutants are present. This adaptability could be significant for bioremediation efforts, as the organism might contribute to the breakdown of harmful substances, thereby playing a role in ecosystem health and restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AP12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AP12 PMI02_contig_549.549, whole genome

Gene Summary

Adenine Count

955216 bp

Thymine Count

957743 bp

Guanine Count

1850173 bp

Cytosine Count

1848485 bp

Genome Length

5611617 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenasePMI02_01413Not AvailableNegative1582860 - 158316810843.2
ring-hydroxylating dioxygenase, large terminal subunitPMI02_01414Not AvailablePositive1583300 - 158453845763.2
iron-binding zinc finger protein, cdgsh typePMI02_01415Not AvailablePositive1584550 - 158535929345.4
putative taurine catabolism dioxygenasePMI02_01416Not AvailablePositive1585356 - 158620431600.7
sugar kinase, ribokinasePMI02_01417Not AvailablePositive1586313 - 158722431145.4
ring-hydroxylating dioxygenase, large terminal subunitPMI02_01418Not AvailableNegative1587262 - 158842842544.9
putative taurine catabolism dioxygenasePMI02_01419Not AvailablePositive1588544 - 158939231507.6
cyanate permeasePMI02_01420Not AvailableNegative1589457 - 159071043662.8
cytosine deaminase-like metal-dependent hydrolasePMI02_01421Not AvailableNegative1590751 - 159215150099.4
dioxygenase, isopenicillin n synthasePMI02_01422Not AvailableNegative1592148 - 159311635167.8

Displaying genes 1441 – 1450 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.