Novosphingobium sp. AP12

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AP12 is a bacterial species characterized by its possession of flagella, which indicates mobility and the ability to navigate through various environments. The presence of flagella can enhance the organism's capacity to colonize surfaces or interact with other microorganisms and substrates in its habitat. Genetically, Novosphingobium sp. AP12 has a single replicon, suggesting a streamlined genomic organization typical of many bacteria, which can influence its replication and stability under different environmental conditions. The genomic data for this species is accessible under the accession number AKKE00000000.1, which allows for further analysis and comparison with other related bacterial strains. Ecologically, the genus Novosphingobium is known for its role in the degradation of complex organic compounds, particularly in contaminated environments. The presence of flagella may enhance the ecological versatility of Novosphingobium sp. AP12, allowing it to effectively colonize and thrive in diverse niches, particularly in environments where organic pollutants are present. This adaptability could be significant for bioremediation efforts, as the organism might contribute to the breakdown of harmful substances, thereby playing a role in ecosystem health and restoration.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AP12
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AP12 PMI02_contig_549.549, whole genome

Gene Summary

Adenine Count

955216 bp

Thymine Count

957743 bp

Guanine Count

1850173 bp

Cytosine Count

1848485 bp

Genome Length

5611617 bp

Protein-coding Genes

5175 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnd family efflux transporter, mfp subunitPMI02_01263Not AvailablePositive1403834 - 140506943535.2
hydrophobe/amphiphile efflux-1 (hae1) family transporterPMI02_01264Not AvailablePositive1405066 - 1408218112313.0
efflux transporter, outer membrane factor lipoprotein, nodt familyPMI02_01265Not AvailablePositive1408220 - 140971352866.8
transcriptional regulatorPMI02_01266Not AvailablePositive1409834 - 141073332482.0
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenasePMI02_01267Not AvailablePositive1410900 - 141165526010.0
nadh:flavin oxidoreductasePMI02_01268Not AvailablePositive1411733 - 141284840181.6
glutathione s-transferasePMI02_01269Not AvailablePositive1412976 - 141364124216.1
dna-binding domain-containing protein, arac-typePMI02_01270Not AvailableNegative1413708 - 141462833701.8
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenasePMI02_01271Not AvailablePositive1414798 - 141554425600.3
arabinose efflux permease family proteinPMI02_01272Not AvailablePositive1415658 - 141706148588.0

Displaying genes 1291 – 1300 of 5273 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.