Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion protein, vc_a0111 family | PMI12_02124 | Not Available | Negative | 2201923 - 2203095 | 43782.1 |
| type vi secretion protein, vc_a0110 family | PMI12_02125 | Not Available | Negative | 2203092 - 2204963 | 69294.6 |
| type vi secretion system lysozyme-related protein | PMI12_02126 | Not Available | Negative | 2204963 - 2205502 | 20207.2 |
| protein of avirulence locus involved in temperature-dependent protein secretion | PMI12_02127 | Not Available | Negative | 2205499 - 2206362 | 31362.9 |
| hemolysin-coregulated protein (uncharacterized) | PMI12_02128 | Not Available | Negative | 2206489 - 2206971 | 17241.2 |
| type vi secretion protein, evpb/vc_a0108 family | PMI12_02129 | Not Available | Negative | 2207019 - 2208527 | 56423.3 |
| type vi secretion protein, vc_a0107 family | PMI12_02130 | Not Available | Negative | 2208552 - 2209121 | 20609.6 |
| type vi secretion-associated protein, impa family | PMI12_02131 | Not Available | Negative | 2209206 - 2210303 | 39731.3 |
| fumarylacetoacetate (faa) hydrolase family protein | PMI12_02132 | Not Available | Negative | 2210444 - 2211637 | 41841.0 |
| aerobic-type carbon monoxide dehydrogenase, large subunit coxl/cutl-like protein | PMI12_02133 | Not Available | Negative | 2211725 - 2215459 | 132980.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
