Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PMI12_05108 | Not Available | Positive | 5372615 - 5374138 | 52909.2 |
| cation/multidrug efflux pump | PMI12_05109 | Not Available | Negative | 5374218 - 5377334 | 111185.0 |
| rnd family efflux transporter, mfp subunit | PMI12_05110 | Not Available | Negative | 5377355 - 5378545 | 41147.2 |
| efflux transporter, outer membrane factor lipoprotein, nodt family | PMI12_05111 | Not Available | Negative | 5378542 - 5380035 | 52125.8 |
| transcriptional regulator | PMI12_05112 | Not Available | Negative | 5380032 - 5380727 | 25990.3 |
| transcriptional regulator containing pas, aaa-type atpase, and dna-binding domain containing protein | PMI12_05113 | Not Available | Positive | 5380832 - 5382403 | 57111.8 |
| hypothetical protein | PMI12_05114 | Not Available | Positive | 5382636 - 5382971 | 12306.0 |
| hypothetical protein | PMI12_05115 | Not Available | Positive | 5383028 - 5383255 | 8592.09 |
| abc-type branched-chain amino acid transport system, periplasmic component | PMI12_05116 | Not Available | Positive | 5383388 - 5384575 | 42645.6 |
| hypothetical protein | PMI12_05117 | Not Available | Negative | 5384668 - 5384753 | 3219.96 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
