Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type spermidine/putrescine transport system, atpase component | PMI12_03950 | Not Available | Negative | 4099434 - 4100519 | 39821.2 |
| abc-type fe3+ transport system, permease component | PMI12_03951 | Not Available | Negative | 4100529 - 4102271 | 62165.7 |
| abc-type fe3+ transport system, periplasmic component | PMI12_03952 | Not Available | Negative | 4102320 - 4103642 | 47283.9 |
| abc-type spermidine/putrescine transport system, atpase component | PMI12_03953 | Not Available | Positive | 4103889 - 4104992 | 40259.3 |
| membrane-associated phospholipid phosphatase | PMI12_03954 | Not Available | Positive | 4105246 - 4106001 | 28731.4 |
| hypothetical protein | PMI12_03955 | Not Available | Positive | 4105998 - 4106720 | 26923.1 |
| urocanate hydratase | PMI12_03956 | Not Available | Negative | 4107673 - 4107867 | 6803.28 |
| signal transduction histidine kinase | PMI12_03957 | Not Available | Positive | 4108020 - 4109753 | 63167.4 |
| hypothetical protein | PMI12_03958 | Not Available | Positive | 4109953 - 4110819 | 29488.5 |
| response regulator containing a chey-like receiver domain and an hth dna-binding domain | PMI12_03959 | Not Available | Negative | 4110918 - 4111565 | 23202.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
