Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein, 1a family | PMI12_03690 | Not Available | Negative | 3834318 - 3836732 | 87751.9 |
| type iv pilus assembly protein pilm | PMI12_03691 | Not Available | Positive | 3836973 - 3838052 | 39004.7 |
| tfp pilus assembly protein piln | PMI12_03692 | Not Available | Positive | 3838049 - 3838669 | 22818.6 |
| tfp pilus assembly protein pilo | PMI12_03693 | Not Available | Positive | 3838676 - 3839353 | 25157.2 |
| tfp pilus assembly protein pilp | PMI12_03694 | Not Available | Positive | 3839350 - 3839889 | 20016.2 |
| type iv pilus secretin pilq/competence protein | PMI12_03695 | Not Available | Positive | 3839886 - 3842036 | 76077.0 |
| shikimate kinase | PMI12_03696 | Not Available | Positive | 3842105 - 3842608 | 18933.7 |
| 3-dehydroquinate synthase | PMI12_03697 | Not Available | Positive | 3842644 - 3843756 | 39301.8 |
| deoxyguanosinetriphosphate triphosphohydrolase, putative | PMI12_03698 | Not Available | Positive | 3843753 - 3844883 | 42503.3 |
| cyanate permease | PMI12_03699 | Not Available | Positive | 3844880 - 3846127 | 42281.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
