Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein, hrpo family | PMI12_03459 | Not Available | Positive | 3577711 - 3577977 | 9522.01 |
| type iii secretion outer membrane pore, yscc/hrcc family | PMI12_03460 | Not Available | Positive | 3577986 - 3579761 | 63434.3 |
| hypothetical protein | PMI12_03461 | Not Available | Positive | 3579766 - 3580941 | 41839.9 |
| hypothetical protein | PMI12_03462 | Not Available | Positive | 3581083 - 3581286 | 6626.68 |
| hypothetical protein | PMI12_03463 | Not Available | Positive | 3581353 - 3581781 | 14744.6 |
| type iii secretion apparatus lipoprotein, yscj/hrcj family | PMI12_03464 | Not Available | Positive | 3581778 - 3582554 | 28483.9 |
| hypothetical protein | PMI12_03465 | Not Available | Positive | 3582564 - 3583274 | 26228.2 |
| type iii secretion apparatus protein, hrpe/yscl family | PMI12_03466 | Not Available | Positive | 3583256 - 3583906 | 23515.3 |
| atpase flii/yscn family | PMI12_03467 | Not Available | Positive | 3583903 - 3585261 | 48106.7 |
| hypothetical protein | PMI12_03468 | Not Available | Positive | 3585258 - 3585743 | 18122.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
