Variovorax sp. CF313

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. CF313 is a rod-shaped bacterium characterized by its single replicon. This trait suggests a streamlined genetic organization, which may contribute to its adaptability and survival in various environments. The genomic data for Variovorax sp. CF313 is available under the accession number AKIW00000000.1, indicating that it has been sequenced and cataloged for further study. The rod shape of Variovorax sp. CF313 is typical of many bacteria, allowing for efficient movement and nutrient absorption in diverse habitats. This morphology may provide advantages in biofilm formation and colonization of surfaces, which is often a critical factor in the ecological roles of bacteria within their environments. The ecological implications of Variovorax sp. CF313 could be significant, especially in the context of bioremediation, given the genus Variovorax is known for its ability to degrade various organic pollutants. The single replicon may also suggest an efficient metabolic pathway, potentially allowing Variovorax sp. CF313 to utilize a range of substrates effectively. This flexibility could enable it to occupy various ecological niches, contributing to nutrient cycling and ecosystem health. In summary, Variovorax sp. CF313 is a rod-shaped bacterium with a single replicon, suggesting adaptability and metabolic efficiency, which may play a role in its ecological function, particularly in bioremediation processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. CF313
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. CF313 PMI12_contig_270.270, whole genome shotgun

Gene Summary

Adenine Count

1000761 bp

Thymine Count

998408 bp

Guanine Count

2015388 bp

Cytosine Count

2014329 bp

Genome Length

6029174 bp

Protein-coding Genes

5584 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
inner membrane protein involved in colicin e2 resistancePMI12_02945Not AvailableNegative3087957 - 308942952653.2
von willebrand factor type a (vwa) domain protein containing proteinPMI12_02946Not AvailablePositive3089635 - 309170775174.8
exosortase/archaeosortase family proteinPMI12_02947Not AvailablePositive3091727 - 309265632730.0
hypothetical proteinPMI12_02948Not AvailablePositive3092637 - 309320621322.5
transglycosylasePMI12_02949Not AvailablePositive3093166 - 309432442048.8
response regulator with putative antiterminator output domainPMI12_02950Not AvailableNegative3094393 - 309574548065.0
nitrate/nitrite transporterPMI12_02951Not AvailablePositive3095934 - 309720244503.5
serine/threonine protein phosphatasePMI12_02952Not AvailableNegative3097223 - 309893561665.4
nad(p)h-dependent nitrite reductase, large subunitPMI12_02953Not AvailablePositive3098999 - 310143189348.5
hypothetical proteinPMI12_02954Not AvailablePositive3101428 - 310221928278.1

Displaying genes 2951 – 2960 of 5654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.