Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyldiaminopimelate transaminase | PMI12_02365 | Not Available | Positive | 2465418 - 2466647 | 44202.5 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | PMI12_02366 | Not Available | Positive | 2466688 - 2467512 | 29331.1 |
| pilus retraction protein pilt | PMI12_02367 | Not Available | Positive | 2467576 - 2468724 | 41955.8 |
| succinyl-diaminopimelate desuccinylase | PMI12_02368 | Not Available | Positive | 2468741 - 2469919 | 41790.6 |
| protein-(glutamine-n5) methyltransferase, ribosomal protein l3-specific | PMI12_02369 | Not Available | Positive | 2469916 - 2470803 | 31878.8 |
| atpase component of abc transporters with duplicated atpase domain | PMI12_02370 | Not Available | Positive | 2470930 - 2472924 | 72746.1 |
| hypothetical protein | PMI12_02371 | Not Available | Positive | 2472953 - 2473456 | 17741.9 |
| putative transcriptional regulator with c-terminal cbs domain containing protein | PMI12_02372 | Not Available | Negative | 2473644 - 2473877 | 8586.54 |
| sos response transcriptional repressor, reca-mediated autopeptidase | PMI12_02373 | Not Available | Positive | 2473946 - 2474662 | 26444.0 |
| hypothetical protein | PMI12_02374 | Not Available | Negative | 2475369 - 2476115 | 27607.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
