Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. CF313 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1000761 bp
Thymine Count
998408 bp
Guanine Count
2015388 bp
Cytosine Count
2014329 bp
Genome Length
6029174 bp
Protein-coding Genes
5584 genes
Non-Coding Genes
70 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function (duf3396) | PMI12_01654 | Not Available | Positive | 1699448 - 1700389 | 34345.9 |
| hypothetical protein | PMI12_01655 | Not Available | Positive | 1700395 - 1701075 | 24303.6 |
| hypothetical protein | PMI12_01656 | Not Available | Positive | 1701072 - 1702340 | 45581.4 |
| type vi secretion system fha domain protein | PMI12_01657 | Not Available | Positive | 1702420 - 1704084 | 57010.9 |
| serine/threonine protein phosphatase | PMI12_01658 | Not Available | Positive | 1704121 - 1704912 | 28179.1 |
| hypothetical protein | PMI12_01659 | Not Available | Negative | 1705010 - 1705549 | 19779.6 |
| type vi secretion system effector, hcp1 family | PMI12_01660 | Not Available | Negative | 1705637 - 1706116 | 16948.7 |
| type vi secretion protein, evpb/vc_a0108 family | PMI12_01661 | Not Available | Negative | 1706269 - 1707762 | 55240.1 |
| type vi secretion protein, vc_a0107 family | PMI12_01662 | Not Available | Negative | 1707795 - 1708310 | 18545.3 |
| type vi secretion-associated protein, impa family | PMI12_01663 | Not Available | Negative | 1708362 - 1709399 | 36578.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
