Vibrio rumoiensis 1S-45

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio rumoiensis strain 1S-45 is characterized by having a single replicon, which suggests a streamlined genomic organization typical of certain Vibrio species. The strain is cataloged in the NCBI database with the accession number AJYK00000000.2, providing a reference for researchers interested in its genetic and phenotypic characteristics. Vibrio species, including V. rumoiensis, are often associated with marine environments, indicating that strain 1S-45 may have ecological relevance in these habitats. The presence of a single replicon could imply specific adaptations that allow this strain to thrive in saline conditions, typical of its genus. Understanding the genomic structure and ecological role of V. rumoiensis could provide insights into the adaptability of marine bacteria and their interactions within aquatic ecosystems. The streamlined genome of V. rumoiensis 1S-45 may facilitate rapid responses to environmental changes, which is a significant trait for survival in fluctuating marine conditions. Overall, the unique genetic and ecological traits of V. rumoiensis 1S-45 contribute to our understanding of bacterial diversity and adaptation in marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio rumoiensis
Strain1S-45

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio rumoiensis 1S-45
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio rumoiensis 1S-45 1S-45_contig_99, whole genome shotgun

Gene Summary

Adenine Count

1014796 bp

Thymine Count

1014491 bp

Guanine Count

713406 bp

Cytosine Count

704703 bp

Genome Length

3447496 bp

Protein-coding Genes

2981 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chloramphenical resistance permease rardA1QC_04005Q9KVF1Negative361461 - 36245936950.1
atp-dependent dna helicase recqA1QC_04010P15043Positive362764 - 36456367671.7
aminopeptidaseA1QC_04015Not AvailablePositive364566 - 36487111378.5
hypothetical proteinA1QC_04020P37619Positive365102 - 36582126898.2
dna polymerase iA1QC_04025P00582Positive366667 - 369486104321.0
yiha family ribosome biogenesis gtp-binding proteinA1QC_04030Q8DDQ8Negative370303 - 37101026748.3
cytochrome cA1QC_04035Q52369Positive371153 - 37177021922.1
gtpase-activating proteinA1QC_04040B7VHD5Positive372351 - 37293221949.7
coproporphyrinogen iii oxidaseA1QC_04045Not AvailablePositive372985 - 37347318727.3
oxygen-independent coproporphyrinogen iii oxidaseA1QC_04050P0A1E2Positive373593 - 37496653245.9

Displaying genes 301 – 310 of 362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

33 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da

Displaying 1–10 of 33 metabolites

Health Effects

No health effects information available for this bacterium.