Candidatus Nitrosarchaeum limnium BG20

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Nitrososphaeria

Order

Nitrosopumilales

Family

Nitrosopumilaceae

Genus

Nitrosarchaeum

Description

Candidatus Nitrosarchaeum limnium BG20 is a notable archaeon characterized by its single replicon, which indicates a streamlined genomic organization. The organism is classified under the phylum Thaumarchaeota, which is known for its role in ammonia oxidation, a critical process in the nitrogen cycle. The accession number for this archaeon is AHJG00000000.1, which provides a reference for genomic information and further studies. Understanding the traits of Candidatus Nitrosarchaeum limnium BG20 is significant in microbial ecology, especially in the context of biogeochemical cycles. As a member of the Thaumarchaeota, this archaeon is likely involved in nitrification processes in various environments, including marine and freshwater ecosystems. Its ability to oxidize ammonia can contribute to nutrient cycling, influencing the productivity of aquatic systems. The presence of a single replicon suggests a potentially efficient replication and maintenance strategy, allowing the organism to adapt to varying environmental conditions. This trait may also reflect the ecological niches occupied by Candidatus Nitrosarchaeum limnium BG20, where competition for resources and adaptation to fluctuating conditions are critical for survival. Overall, Candidatus Nitrosarchaeum limnium BG20 exemplifies the complex interactions within microbial communities and highlights the importance of archaea in nutrient cycling and ecosystem function. Its study can provide insights into the dynamics of ammonia-oxidizing microorganisms and their roles in maintaining ecological balance in various habitats.

Taxonomy

KingdomThermoproteati
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosarchaeum
SpeciesCandidatus Nitrosarchaeum limnium
StrainBG20

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Nitrosarchaeum limnium BG20


Gene Summary

Adenine Count

617126 bp

Thymine Count

635570 bp

Guanine Count

299515 bp

Cytosine Count

303346 bp

Genome Length

1855559 bp

Protein-coding Genes

2634 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBG20_I2201Not AvailableNegative1 - 2048018.37
5s ribosomal rnaNot AvailableNot AvailablePositive916 - 1035Not Available
hypothetical proteinBG20_I2202Not AvailableNegative354 - 155944211.3
Trna-pseudoNot AvailableNot AvailablePositive1669 - 1784Not Available
eukaryotic dna topoisomerase i, catalytic coreBG20_I2204Not AvailableNegative1863 - 307747208.5
Small subunit ribosomal rnaNot AvailableNot AvailablePositive3306 - 4744Not Available
hypothetical proteinBG20_I1440Not AvailableNegative3208 - 486061682.8
hypothetical proteinBG20_I1441Not AvailableNegative4863 - 8135124665.0
hypothetical proteinBG20_I1442Not AvailableNegative8284 - 84275575.89
methyltransferase domain proteinBG20_I1443Not AvailableNegative8618 - 930726921.7

Displaying genes 1 – 10 of 2674 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002736streptomycin 3''-phosphateC21H41N7O15PChemical structure of streptomycin 3''-phosphateNot available
Average662.566Da
Monoisotopic662.239277066Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00035853''-O-adenylylstreptomycinC31H53N12O18PChemical structure of 3''-O-adenylylstreptomycinNot available
Average912.804Da
Monoisotopic912.332742753Da
BASm0010806spectinomycinC14H24N2O7Chemical structure of spectinomycinNot available
Average332.353Da
Monoisotopic332.1583511Da
BASm00108079-O-adenylylspectinomycinC24H36N7O13PChemical structure of 9-O-adenylylspectinomycinNot available
Average661.562Da
Monoisotopic661.2108712Da

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.