Phocaeicola dorei CL03T12C01

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei CL03T12C01 is a Gram-negative, non-motile, rod-shaped bacterium characterized as a chemoheterotroph that requires anaerobic conditions for growth. This organism does not form spores and has a single replicon, which contributes to its genetic stability and adaptability in various environments. Phocaeicola dorei thrives optimally at temperatures around 37°C, placing it within the mesophilic range, which is typical for many bacteria found in warm-blooded hosts. The habitats for Phocaeicola dorei are diverse, suggesting its ability to adapt to multiple ecological niches. The presence of flagella indicates potential motility capabilities in its environment, although the organism is classified as non-motile, which may imply that its flagella serve other functions, possibly in sensing or attachment rather than in movement. Understanding the metabolic pathways and ecological roles of Phocaeicola dorei can provide insights into its interactions within microbial communities, particularly in anaerobic environments. Its chemoheterotrophic lifestyle suggests that it plays a role in the degradation of organic matter, contributing to nutrient cycling in its habitats. Given its optimal growth temperature and anaerobic requirements, Phocaeicola dorei may be particularly important in the gastrointestinal tracts of animals, where it could influence digestion and overall health. Accessions for this organism are cataloged under AGXI00000000.1, facilitating further research into its characteristics and potential applications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainCL03T12C01

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei CL03T12C01
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei CL03T12C01


Gene Summary

Adenine Count

1578661 bp

Thymine Count

1570423 bp

Guanine Count

1116965 bp

Cytosine Count

1121200 bp

Genome Length

5387249 bp

Protein-coding Genes

4417 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated helicase cas3HMPREF1065_03377Not AvailablePositive4080677 - 408290284334.1
hypothetical proteinHMPREF1065_03378Not AvailablePositive4082913 - 408377333184.4
crispr-associated protein cas5, subtype i-c/dvulgHMPREF1065_03379Not AvailablePositive4083766 - 408446727607.2
crispr-associated protein cas8c/csd1, subtype i-c/dvulgHMPREF1065_03380Not AvailablePositive4084464 - 408618565343.8
crispr-associated protein cas7/csd2, subtype i-c/dvulgHMPREF1065_03381Not AvailablePositive4086207 - 408705831382.5
crispr-associated protein cas4HMPREF1065_03382Not AvailablePositive4087068 - 408773325716.9
crispr-associated endonuclease cas1, subtype i-c/dvulgHMPREF1065_03383Not AvailablePositive4087730 - 408875238708.3
crispr-associated endoribonuclease cas2HMPREF1065_03384Not AvailablePositive4088762 - 408905211001.3
hydrogenase maturation gtpase hydfHMPREF1065_03385Not AvailableNegative4090134 - 409132443907.7
iron-only hydrogenase maturation rsam protein hydgHMPREF1065_03386Not AvailableNegative4091374 - 409279253334.2

Displaying genes 3471 – 3480 of 4523 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.