Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | CL03T12C01 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1578661 bp
Thymine Count
1570423 bp
Guanine Count
1116965 bp
Cytosine Count
1121200 bp
Genome Length
5387249 bp
Protein-coding Genes
4417 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1065_01124 | Not Available | Positive | 1265737 - 1266252 | 20084.4 |
| rna polymerase sigma-70 factor, expansion family 1 | HMPREF1065_01125 | Not Available | Positive | 1266523 - 1267074 | 21561.7 |
| hypothetical protein | HMPREF1065_01126 | Not Available | Positive | 1267177 - 1268346 | 44616.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1065_01127 | Not Available | Positive | 1268362 - 1271751 | 126848.0 |
| hypothetical protein | HMPREF1065_01128 | Not Available | Positive | 1271770 - 1273284 | 56840.2 |
| hypothetical protein | HMPREF1065_01129 | Not Available | Positive | 1273396 - 1275081 | 62592.9 |
| hypothetical protein | HMPREF1065_01130 | Not Available | Positive | 1275125 - 1276288 | 44647.1 |
| l-serine ammonia-lyase | HMPREF1065_01131 | Not Available | Positive | 1276438 - 1277646 | 43966.3 |
| hypothetical protein | HMPREF1065_01132 | Not Available | Negative | 1277826 - 1278266 | 16624.2 |
| hypothetical protein | HMPREF1065_01133 | Not Available | Negative | 1278359 - 1278928 | 21139.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

