Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | CL03T12C01 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1578661 bp
Thymine Count
1570423 bp
Guanine Count
1116965 bp
Cytosine Count
1121200 bp
Genome Length
5387249 bp
Protein-coding Genes
4417 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | HMPREF1065_01005 | Not Available | Positive | 1141188 - 1141739 | 21662.8 |
| hypothetical protein | HMPREF1065_01006 | Not Available | Positive | 1141784 - 1142161 | 14654.4 |
| hypothetical protein | HMPREF1065_01007 | Not Available | Positive | 1142173 - 1142619 | 17686.6 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1065_01008 | Not Available | Positive | 1142892 - 1146053 | 117854.0 |
| hypothetical protein | HMPREF1065_01009 | Not Available | Positive | 1146077 - 1147807 | 65720.7 |
| mazg family protein | HMPREF1065_01010 | Not Available | Negative | 1148002 - 1148787 | 30580.4 |
| valyl-trna synthetase | HMPREF1065_01011 | Not Available | Positive | 1148898 - 1151525 | 99811.7 |
| hypothetical protein | HMPREF1065_01012 | Not Available | Negative | 1151706 - 1152146 | 16110.3 |
| sigma-70 family rna polymerase sigma factor | HMPREF1065_01013 | Not Available | Positive | 1152291 - 1152836 | 20982.2 |
| hypothetical protein | HMPREF1065_01014 | Not Available | Positive | 1152833 - 1153201 | 14582.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

