Afipia broomeae ATCC 49717

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia broomeae ATCC 49717 is a gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism possesses true flagella, which facilitate motility in its environment. Genetically, Afipia broomeae is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and survival in various ecological niches. The organism is cataloged under the accession number AGWX00000000.1, which provides a reference for researchers interested in its genetic and phenotypic characteristics. The aerobic nature of Afipia broomeae suggests that it requires oxygen for growth, positioning it within ecosystems where oxygen is readily available. From a biological perspective, the presence of flagella is significant as it enables the bacterium to navigate towards favorable conditions or nutrients, which can be crucial for its survival and proliferation. The combination of its gram-negative structure and aerobic lifestyle may allow Afipia broomeae to occupy specific ecological roles, potentially including involvement in nutrient cycling in its habitat. Understanding its traits can inform studies on its ecological interactions and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia broomeae
StrainATCC 49717

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia broomeae ATCC 49717
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia broomeae ATCC 49717 cont1.6, whole genome shotgun sequence.

Gene Summary

Adenine Count

1015315 bp

Thymine Count

1018355 bp

Guanine Count

1613308 bp

Cytosine Count

1613020 bp

Genome Length

5259998 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l19HMPREF9695_04780Not AvailableNegative4985459 - 498584214180.2
trna (guanine-n(1)-)-methyltransferaseHMPREF9695_04781Not AvailableNegative4985945 - 498668526313.7
ribosome maturation factor rimmHMPREF9695_04782Not AvailableNegative4986702 - 498723518986.8
30s ribosomal protein s16HMPREF9695_04783Not AvailableNegative4987244 - 498757612485.3
signal recognition particle proteinHMPREF9695_04784Not AvailableNegative4987621 - 498915053893.4
hypothetical proteinHMPREF9695_04785Not AvailablePositive4989420 - 499047838745.1
hypothetical proteinHMPREF9695_04786Not AvailableNegative4990485 - 499118624097.7
hypothetical proteinHMPREF9695_04787Not AvailableNegative4991222 - 499204328032.0
diaminopimelate epimeraseHMPREF9695_04788Not AvailablePositive4992208 - 499308031669.7
miab-like trna modifying enzymeHMPREF9695_04789Not AvailablePositive4993083 - 499433345426.8

Displaying genes 4831 – 4840 of 5093 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.