Afipia broomeae ATCC 49717

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Afipia

Description

Afipia broomeae ATCC 49717 is a gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This organism possesses true flagella, which facilitate motility in its environment. Genetically, Afipia broomeae is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and survival in various ecological niches. The organism is cataloged under the accession number AGWX00000000.1, which provides a reference for researchers interested in its genetic and phenotypic characteristics. The aerobic nature of Afipia broomeae suggests that it requires oxygen for growth, positioning it within ecosystems where oxygen is readily available. From a biological perspective, the presence of flagella is significant as it enables the bacterium to navigate towards favorable conditions or nutrients, which can be crucial for its survival and proliferation. The combination of its gram-negative structure and aerobic lifestyle may allow Afipia broomeae to occupy specific ecological roles, potentially including involvement in nutrient cycling in its habitat. Understanding its traits can inform studies on its ecological interactions and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusAfipia
SpeciesAfipia broomeae
StrainATCC 49717

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Afipia broomeae ATCC 49717
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Afipia broomeae ATCC 49717 cont1.6, whole genome shotgun sequence.

Gene Summary

Adenine Count

1015315 bp

Thymine Count

1018355 bp

Guanine Count

1613308 bp

Cytosine Count

1613020 bp

Genome Length

5259998 bp

Protein-coding Genes

5042 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
squalene-hopene cyclaseHMPREF9695_01041Not AvailablePositive1124027 - 112600973397.9
hopanoid-associated phosphorylaseHMPREF9695_01042Not AvailablePositive1126006 - 112669824156.4
hopanoid biosynthesis associated radical sam protein hpnhHMPREF9695_01043Not AvailableNegative1126784 - 112797443824.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2HMPREF9695_01044Not AvailableNegative1127981 - 112895235064.1
1-deoxy-d-xylulose-5-phosphate synthaseHMPREF9695_01045Not AvailableNegative1128963 - 113087967554.1
hopanoid biosynthesis associated rnd transporter like protein hpnnHMPREF9695_01046Not AvailablePositive1131156 - 113368789684.3
hypothetical proteinHMPREF9695_01047Not AvailableNegative1133700 - 113432921591.9
hypothetical proteinHMPREF9695_01048Not AvailablePositive1134444 - 113584450993.7
hypothetical proteinHMPREF9695_01049Not AvailableNegative1135917 - 11361598434.29
trap transporter, 4tm/12tm fusion proteinHMPREF9695_01050Not AvailableNegative1136350 - 113845875037.3

Displaying genes 1051 – 1060 of 5093 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.