Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia broomeae |
| Strain | ATCC 49717 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1015315 bp
Thymine Count
1018355 bp
Guanine Count
1613308 bp
Cytosine Count
1613020 bp
Genome Length
5259998 bp
Protein-coding Genes
5042 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| squalene-hopene cyclase | HMPREF9695_01041 | Not Available | Positive | 1124027 - 1126009 | 73397.9 |
| hopanoid-associated phosphorylase | HMPREF9695_01042 | Not Available | Positive | 1126006 - 1126698 | 24156.4 |
| hopanoid biosynthesis associated radical sam protein hpnh | HMPREF9695_01043 | Not Available | Negative | 1126784 - 1127974 | 43824.9 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 | HMPREF9695_01044 | Not Available | Negative | 1127981 - 1128952 | 35064.1 |
| 1-deoxy-d-xylulose-5-phosphate synthase | HMPREF9695_01045 | Not Available | Negative | 1128963 - 1130879 | 67554.1 |
| hopanoid biosynthesis associated rnd transporter like protein hpnn | HMPREF9695_01046 | Not Available | Positive | 1131156 - 1133687 | 89684.3 |
| hypothetical protein | HMPREF9695_01047 | Not Available | Negative | 1133700 - 1134329 | 21591.9 |
| hypothetical protein | HMPREF9695_01048 | Not Available | Positive | 1134444 - 1135844 | 50993.7 |
| hypothetical protein | HMPREF9695_01049 | Not Available | Negative | 1135917 - 1136159 | 8434.29 |
| trap transporter, 4tm/12tm fusion protein | HMPREF9695_01050 | Not Available | Negative | 1136350 - 1138458 | 75037.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
