Agrobacterium tumefaciens 5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens 5A is a rod-shaped, gram-negative bacterium that is recognized for its role in plant interactions. This organism is an aerobe, requiring oxygen for its metabolic processes, and exhibits mobility due to the presence of flagella. It thrives optimally at a temperature of 25°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. The bacterium is characterized by having a single replicon and two membranes, which is typical of gram-negative bacteria. Its ecological niche is versatile, as it is found in multiple habitats and exists as a free-living organism. This adaptability allows A. tumefaciens 5A to interact with various environments, contributing to its significance in both natural ecosystems and agricultural settings. A notable aspect of A. tumefaciens is its ability to transfer genetic material to plant cells, a feature that has been harnessed in biotechnology for the development of genetically modified crops. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its efficiency in horizontal gene transfer. In summary, Agrobacterium tumefaciens 5A exemplifies a unique ecological role through its free-living lifestyle and aerobic metabolism, while its genetic capabilities have profound implications for plant biotechnology and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens 5A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens 5A contig00050, whole genome shotgun

Gene Summary

Adenine Count

1190263 bp

Thymine Count

1188533 bp

Guanine Count

1673681 bp

Cytosine Count

1690631 bp

Genome Length

5743108 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
binding-protein-dependent transport systems inner membrane componentAT5A_03245Not AvailableNegative721603 - 72252634052.9
sugar abc transporter permeaseAT5A_03250Not AvailableNegative722530 - 72339632301.0
sugar abc transporter nucleotide-binding protein/atpaseAT5A_03255Not AvailableNegative723399 - 72446939068.1
sugar abc transporter atpaseAT5A_03260Not AvailableNegative724483 - 72555339148.2
glycerol-3-phosphate dehydrogenaseAT5A_03265Not AvailableNegative725591 - 72711456275.0
glycerol-3-phosphate regulon repressorAT5A_03270Not AvailableNegative727223 - 72799627718.2
siroheme synthaseAT5A_03275Not AvailableNegative728138 - 72961653161.1
nitrate reductase large subunitAT5A_03280Not AvailableNegative729588 - 73223694966.6
hypothetical proteinAT5A_03285Not AvailableNegative732226 - 7324447848.43
assimilatory nitrite reductase small subunitAT5A_03290Not AvailableNegative732451 - 73278611929.4

Displaying genes 821 – 830 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.