Agrobacterium tumefaciens 5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens 5A is a rod-shaped, gram-negative bacterium that is recognized for its role in plant interactions. This organism is an aerobe, requiring oxygen for its metabolic processes, and exhibits mobility due to the presence of flagella. It thrives optimally at a temperature of 25°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. The bacterium is characterized by having a single replicon and two membranes, which is typical of gram-negative bacteria. Its ecological niche is versatile, as it is found in multiple habitats and exists as a free-living organism. This adaptability allows A. tumefaciens 5A to interact with various environments, contributing to its significance in both natural ecosystems and agricultural settings. A notable aspect of A. tumefaciens is its ability to transfer genetic material to plant cells, a feature that has been harnessed in biotechnology for the development of genetically modified crops. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its efficiency in horizontal gene transfer. In summary, Agrobacterium tumefaciens 5A exemplifies a unique ecological role through its free-living lifestyle and aerobic metabolism, while its genetic capabilities have profound implications for plant biotechnology and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens 5A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens 5A contig00050, whole genome shotgun

Gene Summary

Adenine Count

1190263 bp

Thymine Count

1188533 bp

Guanine Count

1673681 bp

Cytosine Count

1690631 bp

Genome Length

5743108 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is66 orf2 family proteinAT5A_26185Not AvailablePositive5436486 - 543683913926.0
transposase is66AT5A_26190Not AvailablePositive5436946 - 543850858634.1
gcn5-related n-acetyltransferaseAT5A_26195Not AvailablePositive5438702 - 543921719762.6
mrp proteinAT5A_26200Not AvailableNegative5439297 - 543961710859.1
nitrate transport proteinAT5A_26205Not AvailableNegative5439745 - 544096843898.8
transcriptional regulator, luxr family proteinAT5A_26210Not AvailableNegative5441047 - 544178727782.6
pectin degradation repressor protein kdgrAT5A_26215Not AvailableNegative5441996 - 544286531214.4
3-oxoacyl-acyl carrier protein reductaseAT5A_26220Not AvailablePositive5442949 - 544371927033.5
2-keto-3-deoxy-galactonokinaseAT5A_26225Not AvailablePositive5443719 - 544463332104.6
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseAT5A_26230Not AvailablePositive5444642 - 544534024105.6

Displaying genes 5251 – 5260 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.