Agrobacterium tumefaciens 5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens 5A is a rod-shaped, gram-negative bacterium that is recognized for its role in plant interactions. This organism is an aerobe, requiring oxygen for its metabolic processes, and exhibits mobility due to the presence of flagella. It thrives optimally at a temperature of 25°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. The bacterium is characterized by having a single replicon and two membranes, which is typical of gram-negative bacteria. Its ecological niche is versatile, as it is found in multiple habitats and exists as a free-living organism. This adaptability allows A. tumefaciens 5A to interact with various environments, contributing to its significance in both natural ecosystems and agricultural settings. A notable aspect of A. tumefaciens is its ability to transfer genetic material to plant cells, a feature that has been harnessed in biotechnology for the development of genetically modified crops. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its efficiency in horizontal gene transfer. In summary, Agrobacterium tumefaciens 5A exemplifies a unique ecological role through its free-living lifestyle and aerobic metabolism, while its genetic capabilities have profound implications for plant biotechnology and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens 5A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens 5A contig00050, whole genome shotgun

Gene Summary

Adenine Count

1190263 bp

Thymine Count

1188533 bp

Guanine Count

1673681 bp

Cytosine Count

1690631 bp

Genome Length

5743108 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-lactate dehydrogenaseAT5A_25735Not AvailableNegative5362482 - 536310522318.8
trap dicarboxylate transporter subunit dctmAT5A_25740Not AvailableNegative5363185 - 536446244585.0
tripartite atp-independent periplasmic transporter dctqAT5A_25745Not AvailableNegative5364459 - 536495017377.6
trap dicarboxylate transporter subunit dctpAT5A_25750Not AvailableNegative5364947 - 536592735223.9
aldehyde dehydrogenaseAT5A_25755Not AvailableNegative5365985 - 536749952956.4
4-hydroxybutyrate dehydrogenaseAT5A_25760Not AvailableNegative5367525 - 536866139333.7
lysr family transcription regulator proteinAT5A_25765Not AvailablePositive5368825 - 536976034813.6
regulatory protein tetrAT5A_25770Not AvailableNegative5370084 - 537073123560.3
pyridine nucleotide-disulfide oxidoreductaseAT5A_25775Not AvailablePositive5370949 - 537184231955.0
isoprenylcysteine carboxyl methyltransferaseAT5A_25780Not AvailablePositive5371866 - 537233917511.7

Displaying genes 5161 – 5170 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.