Agrobacterium tumefaciens 5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens 5A is a rod-shaped, gram-negative bacterium that is recognized for its role in plant interactions. This organism is an aerobe, requiring oxygen for its metabolic processes, and exhibits mobility due to the presence of flagella. It thrives optimally at a temperature of 25°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. The bacterium is characterized by having a single replicon and two membranes, which is typical of gram-negative bacteria. Its ecological niche is versatile, as it is found in multiple habitats and exists as a free-living organism. This adaptability allows A. tumefaciens 5A to interact with various environments, contributing to its significance in both natural ecosystems and agricultural settings. A notable aspect of A. tumefaciens is its ability to transfer genetic material to plant cells, a feature that has been harnessed in biotechnology for the development of genetically modified crops. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its efficiency in horizontal gene transfer. In summary, Agrobacterium tumefaciens 5A exemplifies a unique ecological role through its free-living lifestyle and aerobic metabolism, while its genetic capabilities have profound implications for plant biotechnology and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens 5A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens 5A contig00050, whole genome shotgun

Gene Summary

Adenine Count

1190263 bp

Thymine Count

1188533 bp

Guanine Count

1673681 bp

Cytosine Count

1690631 bp

Genome Length

5743108 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exu regulon transcriptional regulatorAT5A_00370Not AvailablePositive83373 - 8408926607.7
trap dicarboxylate transporter subunit dctpAT5A_00375Not AvailablePositive84151 - 8512536086.1
tripartite atp-independent periplasmic transporter subunit dctqAT5A_00380Not AvailablePositive85187 - 8575922165.1
trap c4-dicarboxylate transport system permease dctmAT5A_00385Not AvailablePositive85764 - 8717049958.0
zinc-binding dehydrogenaseAT5A_00390Not AvailablePositive87243 - 8828936602.1
mannonate dehydrataseAT5A_00395Not AvailablePositive88306 - 8951444722.9
hypothetical proteinAT5A_00400Not AvailableNegative89543 - 8996515356.1
aldehyde dehydrogenaseAT5A_00405Not AvailablePositive90142 - 9165353226.2
c4-dicarboxylate-binding periplasmic proteinAT5A_00410Not AvailableNegative91711 - 9270936157.2
trap c4-dicarboxylate transport system permease dctmAT5A_00415Not AvailableNegative92726 - 9455862498.3

Displaying genes 241 – 250 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.