Agrobacterium tumefaciens 5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens 5A is a rod-shaped, gram-negative bacterium that is recognized for its role in plant interactions. This organism is an aerobe, requiring oxygen for its metabolic processes, and exhibits mobility due to the presence of flagella. It thrives optimally at a temperature of 25°C and is classified as mesophilic, indicating its preference for moderate temperature ranges. The bacterium is characterized by having a single replicon and two membranes, which is typical of gram-negative bacteria. Its ecological niche is versatile, as it is found in multiple habitats and exists as a free-living organism. This adaptability allows A. tumefaciens 5A to interact with various environments, contributing to its significance in both natural ecosystems and agricultural settings. A notable aspect of A. tumefaciens is its ability to transfer genetic material to plant cells, a feature that has been harnessed in biotechnology for the development of genetically modified crops. The presence of a single replicon suggests a streamlined genetic organization, which may contribute to its efficiency in horizontal gene transfer. In summary, Agrobacterium tumefaciens 5A exemplifies a unique ecological role through its free-living lifestyle and aerobic metabolism, while its genetic capabilities have profound implications for plant biotechnology and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strain5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens 5A
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens 5A contig00050, whole genome shotgun

Gene Summary

Adenine Count

1190263 bp

Thymine Count

1188533 bp

Guanine Count

1673681 bp

Cytosine Count

1690631 bp

Genome Length

5743108 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aldo/keto reductaseAT5A_05355Not AvailableNegative1134390 - 113543338086.1
malonyl coa-acyl carrier protein transacylaseAT5A_05360Not AvailablePositive1135656 - 113660032392.1
3-ketoacyl-(acyl-carrier-protein) reductase nodgAT5A_05365Not AvailablePositive1136700 - 113743726083.8
acyl carrier proteinAT5A_05370Not AvailablePositive1137788 - 11380248338.78
3-oxoacyl-(acyl carrier protein) synthase iiAT5A_05375Not AvailablePositive1138271 - 113953344293.8
aminodeoxychorismate lyaseAT5A_05380Not AvailablePositive1139899 - 114111944617.2
hypothetical proteinAT5A_05385Not AvailablePositive1141188 - 114207532271.3
guanylate kinaseAT5A_05390Not AvailablePositive1142080 - 114274225258.1
phospholipase/carboxylesterase family proteinAT5A_05395Not AvailableNegative1142770 - 114338422718.9
16s ribosomal rna methyltransferase ksga/dim1 family proteinAT5A_05400Not AvailableNegative1143441 - 114427130082.8

Displaying genes 1221 – 1230 of 5576 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.