Methylorubrum extorquens DSM 13060

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens DSM 13060 is a facultative aerobic, Gram-negative bacterium classified as a methylotroph, which utilizes methanol and other one-carbon compounds as its primary energy source. This organism exhibits a rod shape and is capable of movement, facilitated by the presence of flagella. In terms of cell arrangement, M. extorquens can be found in pairs or as single cells. This species thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range. M. extorquens has a unique cellular structure, consisting of two membranes and a single replicon, which is characteristic of its classification within the Proteobacteria phylum. Ecologically, Methylorubrum extorquens demonstrates free-living behavior, which allows it to inhabit various environments. It has been identified as associated with Pinus sylvestris, indicating a potential symbiotic relationship with this host species. This association highlights the role of M. extorquens in carbon cycling, especially in environments where methanol is present, contributing to the ecological dynamics surrounding forest ecosystems. Its ability to utilize methylated compounds may also play a significant role in the degradation of organic matter and the recycling of nutrients in its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainDSM 13060

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens DSM 13060
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pinus sylvestris
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens DSM 13060


Gene Summary

Adenine Count

1053445 bp

Thymine Count

1061809 bp

Guanine Count

2278460 bp

Cytosine Count

2277492 bp

Genome Length

6671206 bp

Protein-coding Genes

6807 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposaseMetexDRAFT_4812Not AvailablePositive4881076 - 488155217339.5
nad-dependent epimerase/dehydrataseMetexDRAFT_4813Not AvailablePositive4882164 - 488322239189.9
short-chain dehydrogenase/reductase sdrMetexDRAFT_4814Not AvailablePositive4883267 - 48834466347.63
zinc-binding alcohol dehydrogenase family proteinMetexDRAFT_4815Not AvailableNegative4883436 - 488445835830.3
transposase is4 family proteinMetexDRAFT_4816Not AvailablePositive4884739 - 488618753006.1
transcriptional regulator, tetr familyMetexDRAFT_4817Not AvailablePositive4886386 - 488709625449.1
thij/pfpi domain-containing proteinMetexDRAFT_4818Not AvailablePositive4887273 - 488795624257.8
amidaseMetexDRAFT_4819Not AvailablePositive4888197 - 48883736067.43
peptidase membrane zinc metallopeptidaseMetexDRAFT_4820Not AvailableNegative4888634 - 488937726538.9
cyclic nucleotide-regulated fad-dependent pyridine nucleotide-disulfide oxidoreductaseMetexDRAFT_4821Not AvailableNegative4889541 - 489115757896.3

Displaying genes 4861 – 4870 of 6897 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.