Yokenella regensburgei ATCC 43003

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Yokenella

Description

Yokenella regensburgei ATCC 43003 is a bacterial species characterized by a single replicon and is cataloged under the accession number AGCL00000000.1. This organism belongs to the family Enterobacteriaceae and is known for its role in the gastrointestinal tract of humans and animals. Yokenella regensburgei has been noted for its potential relevance in clinical microbiology, particularly in relation to infections and its presence in various environmental samples. The single replicon indicates a streamlined genomic organization, which may contribute to its adaptability and survival in diverse environments. Ecologically, Yokenella regensburgei may play a role in the microbial community structure within the gut microbiome, influencing nutrient metabolism and host health. Its presence in the gastrointestinal flora suggests a possible symbiotic relationship with the host, although the specific interactions and functions it performs within this ecosystem are not detailed in the provided information. In summary, Yokenella regensburgei ATCC 43003 is a noteworthy member of the Enterobacteriaceae family, with a simple genomic structure that may facilitate its ecological roles in various environments and within host organisms. Further study could elucidate its specific contributions to microbial communities and its implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusYokenella
SpeciesYokenella regensburgei
StrainATCC 43003

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Yokenella regensburgei ATCC 43003
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yokenella regensburgei ATCC 43003


Gene Summary

Adenine Count

1055887 bp

Thymine Count

1058962 bp

Guanine Count

1293405 bp

Cytosine Count

1272878 bp

Genome Length

4681132 bp

Protein-coding Genes

4526 genes

Non-Coding Genes

283 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Duf2732 family proteinHMPREF0880_00893Not AvailablePositive885032 - 8852658599.19
Trar/dksa family transcriptional regulatorHMPREF0880_00894Not AvailablePositive885265 - 8854928351.12
Hypothetical proteinHMPREF0880_00895Not AvailablePositive885489 - 88578510681.9
Dna adenine methylase-like proteinHMPREF0880_00896Not AvailablePositive885782 - 88664232254.8
Replication proteinHMPREF0880_00897Not AvailablePositive886633 - 88904192030.0
Hypothetical proteinHMPREF0880_00898Not AvailablePositive889200 - 8893917458.06
Dna damage inducible proteinHMPREF0880_00899Not AvailablePositive889403 - 8896369133.07
hypothetical proteinHMPREF0880_00900Not AvailableNegative889683 - 89041427013.4
Hypothetical proteinHMPREF0880_00901Not AvailablePositive890495 - 8906385507.71
Portal proteinHMPREF0880_00902Not AvailableNegative890778 - 89183640173.9

Displaying genes 11 – 20 of 4809 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

512 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 512 metabolites

Health Effects

No health effects information available for this bacterium.