Acidiphilium sp. PM

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acidocellaceae

Genus

Acidiphilium

Description

Acidiphilium sp. PM is a Gram-negative bacterium characterized by its rod-shaped morphology. It possesses flagella, which suggests motility, allowing it to navigate its environment effectively. The organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various conditions. The bacterium is classified under the genus Acidiphilium, which is known for its acidophilic nature, thriving in acidic environments. This characteristic is significant from an ecological perspective, as Acidiphilium species often play vital roles in biogeochemical cycles, particularly in acidic habitats such as mine drainage and other low pH ecosystems. The accession number AFPR00000000.1 provides a reference for further genomic and taxonomic studies of Acidiphilium sp. PM, facilitating a deeper understanding of its genetics and potential applications in biotechnology or environmental management. Overall, the traits of Acidiphilium sp. PM underscore its ecological importance in acidic environments and hint at its potential utility in bioremediation efforts or bioenergy production, reflecting the diverse roles bacteria can play in their ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcidocellaceae
GenusAcidiphilium
SpeciesAcidiphilium sp. PM
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Acidiphilium sp. PM
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatRio Tinto
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acidiphilium sp. PM plasmid pAPM09 Ctg_00571, whole genome shotgun

Gene Summary

Adenine Count

659731 bp

Thymine Count

660191 bp

Guanine Count

1304981 bp

Cytosine Count

1304559 bp

Genome Length

3929465 bp

Protein-coding Genes

3859 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAPM_0007Not AvailablePositive7683 - 831823895.3
flagellar hook-associated protein flgkAPM_0008Not AvailableNegative8747 - 1020448336.6
flgeAPM_0009O52070Negative10247 - 1152443078.3
hypothetical proteinAPM_0010Not AvailablePositive11709 - 1346656016.2
flagellar hook capping proteinAPM_0011Not AvailablePositive13515 - 1427625119.7
hypothetical proteinAPM_0012Not AvailableNegative14370 - 1510826634.5
hypothetical proteinAPM_0013Not AvailableNegative15804 - 1694643976.6
hypothetical proteinAPM_0014Not AvailableNegative17203 - 1865454166.7
putative glycosyltransferaseAPM_0015P77293Negative18697 - 1974939220.6
parb-like partition proteinAPM_0016P0A151Negative20025 - 2148855004.6

Displaying genes 11 – 20 of 3908 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

304 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da

Displaying 1–10 of 304 metabolites

Health Effects

No health effects information available for this bacterium.