Shigella boydii 5216-82

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 5216-82 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is motile, as indicated by the presence of flagella. It possesses a single replicon, which is significant for its genetic stability and replication processes. The genomic sequence of Shigella boydii 5216-82 is cataloged under the accession number AFGE00000000.1, allowing for further genomic studies and comparisons with other strains. As a member of the Shigella genus, this strain is known to be pathogenic, often associated with shigellosis, an infectious disease that causes diarrhea, fever, and abdominal cramps. The motility conferred by its flagella may play a role in its ability to invade host intestinal cells, a critical aspect of its pathogenicity. In an ecological context, Shigella boydii, including this strain, is typically transmitted through the fecal-oral route, and its presence in a population can indicate issues related to sanitation and hygiene. Understanding the traits of this bacterium helps in tracking outbreaks and implementing necessary public health measures. Further research is essential to explore its interactions within the microbiome and its resistance mechanisms, as these factors contribute to its persistence and spread in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella genomosp. SF-2015
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shigella boydii 5216-82
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shigella boydii 5216-82 gss521682.contig.74, whole genome shotgun

Gene Summary

Adenine Count

1197016 bp

Thymine Count

1205480 bp

Guanine Count

1241135 bp

Cytosine Count

1238820 bp

Genome Length

4882454 bp

Protein-coding Genes

4843 genes

Non-Coding Genes

514 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integrase core domain proteinSB521682_2716Not AvailablePositive2505070 - 250597534400.0
fimbrial family proteinSB521682_2717Not AvailableNegative2506507 - 250703118331.7
fimbrial subunitSB521682_2718Not AvailableNegative2507028 - 250749817033.3
putative minor fimbrial subunitSB521682_2719Not AvailableNegative2507495 - 25076174157.91
chaperone protein pmfdSB521682_2720Not AvailableNegative2508018 - 250866224075.0
outer membrane usher protein papc domain proteinSB521682_2721Not AvailableNegative2508790 - 251058365336.6
outer membrane usher protein papc domain proteinSB521682_2722Not AvailableNegative2510676 - 251143428416.6
putative fimbrial subunitSB521682_2723Not AvailableNegative2511516 - 251207919869.3
phosphohistidine phosphatase sixaSB521682_2724Not AvailableNegative2512763 - 251324817208.8
fatty oxidation complex, alpha subunit fadjSB521682_2725Not AvailableNegative2513451 - 251559577056.9

Displaying genes 2971 – 2980 of 5357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.