Shigella boydii 5216-82

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii 5216-82 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is motile, as indicated by the presence of flagella. It possesses a single replicon, which is significant for its genetic stability and replication processes. The genomic sequence of Shigella boydii 5216-82 is cataloged under the accession number AFGE00000000.1, allowing for further genomic studies and comparisons with other strains. As a member of the Shigella genus, this strain is known to be pathogenic, often associated with shigellosis, an infectious disease that causes diarrhea, fever, and abdominal cramps. The motility conferred by its flagella may play a role in its ability to invade host intestinal cells, a critical aspect of its pathogenicity. In an ecological context, Shigella boydii, including this strain, is typically transmitted through the fecal-oral route, and its presence in a population can indicate issues related to sanitation and hygiene. Understanding the traits of this bacterium helps in tracking outbreaks and implementing necessary public health measures. Further research is essential to explore its interactions within the microbiome and its resistance mechanisms, as these factors contribute to its persistence and spread in various environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella genomosp. SF-2015
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shigella boydii 5216-82
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shigella boydii 5216-82 gss521682.contig.74, whole genome shotgun

Gene Summary

Adenine Count

1197016 bp

Thymine Count

1205480 bp

Guanine Count

1241135 bp

Cytosine Count

1238820 bp

Genome Length

4882454 bp

Protein-coding Genes

4843 genes

Non-Coding Genes

514 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transposase dde domain proteinSB521682_1412Not AvailableNegative1347859 - 134918750400.9
aldehyde-alcohol dehydrogenaseSB521682_1413Not AvailableNegative1349313 - 135198896132.5
marc family integral membrane family proteinSB521682_1414Not AvailablePositive1352465 - 135311223488.7
hypothetical proteinSB521682_1415Not AvailableNegative1353270 - 13534315837.79
periplasmic oligopeptide-binding protein domain proteinSB521682_1416Not AvailablePositive1353850 - 135464128885.1
periplasmic oligopeptide-binding protein domain proteinSB521682_1417Not AvailablePositive1354655 - 135548231567.5
oligopeptide transport system permease protein oppbSB521682_1418Not AvailablePositive1355568 - 135648833415.3
oligopeptide transport system permease protein oppcSB521682_1419Not AvailablePositive1356503 - 135741132980.9
oligopeptide transport atp-binding protein oppdSB521682_1420Not AvailablePositive1357423 - 135843637167.7
oligopeptide transport atp-binding protein oppfSB521682_1421Not AvailablePositive1358433 - 135943737179.8

Displaying genes 1911 – 1920 of 5357 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.