Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 strain JA2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Sphaerotilaceae

Genus

Rubrivivax

Description

Rubrivivax benzoatilyticus JA2, also designated as ATCC BAA-35 strain JA2, is a bacterium notable for its unique metabolic capabilities. This organism possesses a single replicon, which is an essential characteristic influencing its genetic stability and replication processes. The complete genomic sequence of this strain is available under the accession AEWG00000000.1, providing a foundational reference for researchers interested in its genetic composition and functional attributes. R. benzoatilyticus JA2 is recognized for its ability to degrade benzoate, suggesting its potential applications in bioremediation and environmental microbiology. The degradation of aromatic compounds, such as benzoate, is crucial in the context of managing environmental pollutants, particularly in contaminated soils and water bodies. The metabolic pathways employed by this strain to facilitate benzoate degradation could be further explored for biotechnological applications. The ecological significance of Rubrivivax benzoatilyticus JA2 lies in its role in carbon cycling, particularly in environments where benzoate is a prevalent carbon source. By breaking down this compound, R. benzoatilyticus contributes to the overall health of ecosystems, aiding in the removal of potentially harmful substances and promoting the sustainability of microbial communities. Thus, understanding the metabolic processes of this strain can provide insights into its role in environmental remediation and its contributions to ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilySphaerotilaceae
GenusRubrivivax
SpeciesRubrivivax benzoatilyticus
StrainJA2 = ATCC BAA-35 strain JA2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 strain JA2

Gene Summary

Adenine Count

586341 bp

Thymine Count

587731 bp

Guanine Count

1479061 bp

Cytosine Count

1476761 bp

Genome Length

4129939 bp

Protein-coding Genes

3898 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutathione s-transferase domain-containing proteinRBXJA2T_03471Not AvailablePositive727950 - 72864226245.5
lipoprotein, yaec familyRBXJA2T_03476Not AvailableNegative728700 - 72948828512.4
flagellar basal body rod proteinRBXJA2T_03481Not AvailableNegative729631 - 73012516727.1
cold-shock dna-binding protein family proteinRBXJA2T_03486Not AvailablePositive730264 - 7304767693.08
hypothetical proteinRBXJA2T_03491Not AvailablePositive730575 - 73157335843.4
diguanylate cyclase with pas/pac and gaf sensorsRBXJA2T_03496Not AvailableNegative731587 - 73318257091.6
hypothetical proteinRBXJA2T_03501Not AvailableNegative733443 - 73387115567.5
plasmid stabilization system proteinRBXJA2T_03506Not AvailableNegative734358 - 73469912728.5
putative antitoxin, prevent-host-death family proteinRBXJA2T_03511Not AvailableNegative734699 - 7349749886.95
restriction endonucleaseRBXJA2T_03516Not AvailableNegative735093 - 73599232194.0

Displaying genes 701 – 710 of 3947 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

132 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da

Displaying 1–10 of 132 metabolites

Health Effects

No health effects information available for this bacterium.