Campylobacter upsaliensis JV21

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter upsaliensis JV21 is a Gram-negative bacterium characterized by its single replicon structure, which is significant for its genetic stability and replication processes. The organism is cataloged under the accession number AEPU00000000.1, providing a reference point for genomic studies and comparative analyses. C. upsaliensis is known for its role in gastrointestinal infections, often linked to foodborne illnesses. It is part of a group of Campylobacter species that are commonly found in the intestinal tracts of birds and other animals. These bacteria typically thrive in microaerobic environments, which are low in oxygen, a characteristic that influences their ecological niche and interactions within various ecosystems. Understanding the genomic features and traits of C. upsaliensis can aid in developing effective strategies for monitoring and controlling its presence in food products and the environment. Given its association with human disease, insights into its genetic makeup and behavior may contribute to public health efforts aimed at reducing the incidence of Campylobacter-related infections. As research continues, the genomic data associated with C. upsaliensis could provide further understanding of its pathogenic mechanisms and ecological roles in different habitats.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter upsaliensis
StrainJV21

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter upsaliensis JV21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter upsaliensis JV21 contig00049, whole genome shotgun

Gene Summary

Adenine Count

523291 bp

Thymine Count

534039 bp

Guanine Count

276657 bp

Cytosine Count

287702 bp

Genome Length

1621689 bp

Protein-coding Genes

1705 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
5s ribosomal rnaNot AvailableNot AvailablePositive70 - 184Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive294 - 1794Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive397 - 3478Not Available
conserved hypothetical proteinHMPREF9400_0001Not AvailablePositive627 - 8066962.51
conserved hypothetical proteinHMPREF9400_0002Not AvailablePositive1052 - 11774718.83
conserved hypothetical proteinHMPREF9400_0003Not AvailablePositive1275 - 177518926.2
conserved hypothetical proteinHMPREF9400_0004Not AvailablePositive1946 - 226312141.7
conserved hypothetical proteinHMPREF9400_0005Not AvailablePositive2407 - 279014650.3
hypothetical proteinHMPREF9400_0006Not AvailableNegative2748 - 28945792.22
Ncrna_class:otherNot AvailableNot AvailablePositive3315 - 3468Not Available

Displaying genes 1 – 10 of 1751 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

507 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 507 metabolites

Health Effects

No health effects information available for this bacterium.