Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio caribbeanicus ATCC BAA-2122, designated as VIBC2010_99, is a bacterium that primarily inhabits gravel and the water column. This ecological niche suggests its adaptability to both sedimentary and pelagic environments, which may influence its interactions within aquatic ecosystems. The organism is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in resource utilization and adaptability in various habitats. The genomic information for V. caribbeanicus is accessible under the accession number AEIU00000000.1, which provides a basis for genomic studies that can further elucidate its metabolic capabilities and potential ecological roles. Understanding the habitat preferences and genomic characteristics of V. caribbeanicus can offer insights into its ecological functions, such as nutrient cycling and interactions with other microorganisms. Its presence in gravel and the water column suggests it may play a role in both sediment stabilization and water quality, highlighting its significance in maintaining ecological balance in coastal and marine environments. Further research could explore its specific contributions to biodiversity and ecosystem health in the habitats it occupies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio caribbeanicus
StrainATCC BAA-2122 VIBC2010_99

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgravel; water column
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99, whole genome

Gene Summary

Adenine Count

1278010 bp

Thymine Count

1295762 bp

Guanine Count

927055 bp

Cytosine Count

909709 bp

Genome Length

4410536 bp

Protein-coding Genes

4023 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv prepilin-like proteins leader peptide processing enzymeVIBC2010_01683Not AvailableNegative2955201 - 295607032559.7
type iv pilin biogenesis protein pilcVIBC2010_01688Not AvailableNegative2956102 - 295731945811.2
type iv pilus assembly protein pilbVIBC2010_01693Not AvailableNegative2957338 - 295902962923.9
pilin subunit pilaVIBC2010_01698Not AvailableNegative2959036 - 295946115869.0
quinolinate phosphoribosyltransferaseVIBC2010_01703Not AvailableNegative2959699 - 296058932350.4
n-acetyl-anhydromuranmyl-l-alanine amidaseVIBC2010_01708Not AvailablePositive2960641 - 296127024257.4
flavodoxin fldbVIBC2010_01713Not AvailableNegative2961291 - 296181219671.0
site-specific tyrosine recombinase xerdVIBC2010_01718Not AvailablePositive2961965 - 296287334897.2
thiol:disulfide interchange protein dsbcVIBC2010_01723Not AvailablePositive2962914 - 296365427570.6
ssdna exonuclease recjVIBC2010_01728Not AvailablePositive2963673 - 296540964010.7

Displaying genes 2761 – 2770 of 4084 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.