Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio caribbeanicus ATCC BAA-2122, designated as VIBC2010_99, is a bacterium that primarily inhabits gravel and the water column. This ecological niche suggests its adaptability to both sedimentary and pelagic environments, which may influence its interactions within aquatic ecosystems. The organism is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in resource utilization and adaptability in various habitats. The genomic information for V. caribbeanicus is accessible under the accession number AEIU00000000.1, which provides a basis for genomic studies that can further elucidate its metabolic capabilities and potential ecological roles. Understanding the habitat preferences and genomic characteristics of V. caribbeanicus can offer insights into its ecological functions, such as nutrient cycling and interactions with other microorganisms. Its presence in gravel and the water column suggests it may play a role in both sediment stabilization and water quality, highlighting its significance in maintaining ecological balance in coastal and marine environments. Further research could explore its specific contributions to biodiversity and ecosystem health in the habitats it occupies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio caribbeanicus
StrainATCC BAA-2122 VIBC2010_99

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgravel; water column
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99, whole genome

Gene Summary

Adenine Count

1278010 bp

Thymine Count

1295762 bp

Guanine Count

927055 bp

Cytosine Count

909709 bp

Genome Length

4410536 bp

Protein-coding Genes

4023 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseVIBC2010_08653Not AvailablePositive115446 - 11618026437.7
integral membrane sensor hybrid histidine kinaseVIBC2010_08658Not AvailableNegative116260 - 119034105225.0
hypothetical proteinVIBC2010_08663Not AvailablePositive119389 - 11977815030.0
yscc/hrcc family type iii secretion outer membrane proteinVIBC2010_08668Not AvailablePositive119775 - 12124453646.1
yscd/hrpq family type iii secretion apparatus proteinVIBC2010_08673Not AvailablePositive121262 - 12246744623.1
hypothetical proteinVIBC2010_08678Not AvailablePositive122476 - 1226647116.6
hypothetical proteinVIBC2010_08683Not AvailablePositive122717 - 12306113120.6
espa family secreted proteinVIBC2010_08688Not AvailablePositive123491 - 12406320641.4
espa family secreted proteinVIBC2010_08693Not AvailablePositive124087 - 12487228768.2
type iii secretion system chaperone, sycd family proteinVIBC2010_08698Not AvailablePositive124882 - 12535518102.4

Displaying genes 111 – 120 of 4084 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.