Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio caribbeanicus ATCC BAA-2122, designated as VIBC2010_99, is a bacterium that primarily inhabits gravel and the water column. This ecological niche suggests its adaptability to both sedimentary and pelagic environments, which may influence its interactions within aquatic ecosystems. The organism is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its efficiency in resource utilization and adaptability in various habitats. The genomic information for V. caribbeanicus is accessible under the accession number AEIU00000000.1, which provides a basis for genomic studies that can further elucidate its metabolic capabilities and potential ecological roles. Understanding the habitat preferences and genomic characteristics of V. caribbeanicus can offer insights into its ecological functions, such as nutrient cycling and interactions with other microorganisms. Its presence in gravel and the water column suggests it may play a role in both sediment stabilization and water quality, highlighting its significance in maintaining ecological balance in coastal and marine environments. Further research could explore its specific contributions to biodiversity and ecosystem health in the habitats it occupies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio caribbeanicus
StrainATCC BAA-2122 VIBC2010_99

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgravel; water column
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio caribbeanicus ATCC BAA-2122 VIBC2010_99, whole genome

Gene Summary

Adenine Count

1278010 bp

Thymine Count

1295762 bp

Guanine Count

927055 bp

Cytosine Count

909709 bp

Genome Length

4410536 bp

Protein-coding Genes

4023 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative taurine catabolism dioxygenaseVIBC2010_00105Not AvailableNegative1238859 - 123968932075.0
putative cyclopropane fatty acid synthaseVIBC2010_00110Not AvailablePositive1239748 - 124035023666.1
lysr family transcriptional regulatorVIBC2010_00115Not AvailablePositive1240469 - 124136232936.6
hypothetical proteinVIBC2010_00120Not AvailablePositive1241454 - 124227530318.1
trap-type c4-dicarboxylate transport system, periplasmic componentVIBC2010_00125Not AvailablePositive1242307 - 124327235545.7
tripartite atp-independent periplasmic transporter dctqVIBC2010_00130Not AvailablePositive1243321 - 124382718724.4
trap dicarboxylate transporter, dctm subunitVIBC2010_00135Not AvailablePositive1243829 - 124513646042.3
lamb/ycsf family proteinVIBC2010_00140Not AvailablePositive1245159 - 124590227238.6
putative allophanate hydrolase subunit 1VIBC2010_00145Not AvailablePositive1245892 - 124657825196.5
urea amidolyase related proteinVIBC2010_00150Not AvailablePositive1246575 - 124749233338.0

Displaying genes 1161 – 1170 of 4084 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.